Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 4
- cytosol 2
- golgi 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005185.1-P | |
| Bra007023.1-P | |
| Bra008294.1-P | |
| Bra010500.1-P | |
| Bra010982.1-P | |
| Bra012490.1-P | |
| Bra012620.1-P | |
| Bra013774.1-P | |
| Bra014558.1-P | |
| Bra015345.1-P | |
| Bra016026.1-P | |
| Bra016028.1-P | |
| Bra018026.1-P | |
| Bra018682.1-P | |
| Bra022177.1-P | |
| Bra024215.1-P | |
| Bra024481.1-P | |
| Bra024770.1-P | |
| Bra024985.1-P | |
| Bra024986.1-P | |
| Bra026272.1-P | |
| Bra027986.1-P | |
| Bra029928.1-P | |
| Bra030509.1-P | |
| Bra030588.1-P | |
| Bra032493.1-P | |
| Bra032586.1-P | |
| Bra032828.1-P | |
| Bra033346.1-P | |
| Bra035298.1-P | |
| Bra036285.1-P | |
| Bra037242.1-P | |
| Bra038695.1-P | |
| Bra039911.1-P | |
| Bra040115.1-P | |
| Bra040415.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02195.1 | Bra022177.1-P | AT1G02780.1 | 24556609 |
| AT4G02195.1 | Bra030509.1-P | AT1G02780.1 | 24556609 |
| AT4G02195.1 | Bra032586.1-P | AT1G02780.1 | 24556609 |
| AT4G02195.1 | Bra033346.1-P | AT1G02780.1 | 24556609 |
| AT4G02195.1 | Bra036285.1-P | AT1G02780.1 | 24556609 |
| AT4G02195.1 | Bra015345.1-P | AT1G04750.1 | 24556609 |
| AT4G02195.1 | Bra030588.1-P | AT1G04750.1 | 24556609 |
| AT4G02195.1 | Bra032493.1-P | AT1G04750.1 | 24556609 |
| AT4G02195.1 | Bra005185.1-P | AT1G07660.1 | 24556609 |
| AT4G02195.1 | Bra007023.1-P | AT1G07820.1 | 24556609 |
| AT4G02195.1 | Bra010982.1-P | AT1G25260.1 | 24556609 |
| AT4G02195.1 | Bra012490.1-P | AT1G25260.1 | 24556609 |
| AT4G02195.1 | Bra024770.1-P | AT1G25260.1 | 24556609 |
| AT4G02195.1 | Bra032828.1-P | AT1G27400.1 | 24556609 |
| AT4G02195.1 | Bra024985.1-P | AT1G43170.1 | 24556609 |
| AT4G02195.1 | Bra024986.1-P | AT1G43170.1 | 24556609 |
| AT4G02195.1 | Bra027986.1-P | AT1G43170.1 | 24556609 |
| AT4G02195.1 | Bra035298.1-P | AT1G43170.1 | 24556609 |
| AT4G02195.1 | Bra016026.1-P | AT1G72900.1 | 24556609 |
| AT4G02195.1 | Bra016028.1-P | AT1G72900.1 | 24556609 |
| AT4G02195.1 | Bra008294.1-P | AT1G77140.1 | 10888666 |
| AT4G02195.1 | Bra008294.1-P | AT1G77140.1 | 24556609 |
| AT4G02195.1 | Bra024481.1-P | AT2G18020.1 | 24556609 |
| AT4G02195.1 | Bra037242.1-P | AT2G18020.1 | 24556609 |
| AT4G02195.1 | Bra039911.1-P | AT2G18020.1 | 24556609 |
| AT4G02195.1 | Bra014558.1-P | AT2G42740.1 | 24556609 |
| AT4G02195.1 | Bra040115.1-P | AT3G04920.1 | 24556609 |
| AT4G02195.1 | Bra040415.1-P | AT3G04920.1 | 24556609 |
| AT4G02195.1 | Bra038695.1-P | AT3G12030.1 | 24556609 |
| AT4G02195.1 | Bra018026.1-P | AT3G48930.1 | 24556609 |
| AT4G02195.1 | Bra029928.1-P | AT3G48930.1 | 24556609 |
| AT4G02195.1 | Bra018682.1-P | AT3G53730.1 | 24556609 |
| AT4G02195.1 | Bra012620.1-P | AT4G18060.1 | 24556609 |
| AT4G02195.1 | Bra010500.1-P | AT4G24190.1 | 24556609 |
| AT4G02195.1 | Bra013774.1-P | AT4G24190.1 | 24556609 |
| AT4G02195.1 | Bra024215.1-P | AT4G28250.1 | 24556609 |
| AT4G02195.1 | Bra026272.1-P | AT4G28250.1 | 24556609 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52786 | Canola | mitochondrion | 96.53 | 86.34 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 90.62 | 80.81 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 68.4 | 61.95 |
| KRH68233 | Soybean | plastid | 66.67 | 60.0 |
| KRG96492 | Soybean | plastid | 67.01 | 59.57 |
| Os06t0116300-01 | Rice | plasma membrane | 67.71 | 59.09 |
| Zm00001d013996_P003 | Maize | mitochondrion | 65.62 | 59.06 |
| Zm00001d039404_P001 | Maize | plasma membrane | 65.97 | 58.82 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 48.61 | 58.82 |
| OQU86127 | Sorghum | mitochondrion | 66.32 | 58.59 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 65.97 | 57.93 |
| Bra040527.1-P | Field mustard | mitochondrion | 63.89 | 57.86 |
| Zm00001d045530_P001 | Maize | cytosol | 18.06 | 57.78 |
| GSMUA_Achr11P... | Banana | mitochondrion | 64.58 | 57.23 |
| Bra039417.1-P | Field mustard | mitochondrion | 62.85 | 57.1 |
| GSMUA_Achr4P18460_001 | Banana | mitochondrion | 63.89 | 54.93 |
| GSMUA_Achr10P... | Banana | mitochondrion | 62.85 | 54.85 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 58.68 | 52.81 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 65.62 | 52.21 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 57.64 | 52.04 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 57.64 | 50.61 |
| EER87742 | Sorghum | mitochondrion | 41.67 | 50.42 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 45.49 | 50.38 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.4 | EnsemblPlantsGene:Bra036287 | EnsemblPlants:Bra036287.1 | EnsemblPlants:Bra036287.1-P | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006950 |
| GO:GO:0007030 | GO:GO:0007034 | GO:GO:0008150 | GO:GO:0009306 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | GO:GO:1900150 |
| InterPro:IPR000727 | UniProt:M4F5D1 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF83 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| InterPro:T_SNARE_dom | UniParc:UPI0002541F9F | : | : | : | : |
Description
AT4G02195 (E=4e-143) SYP42, TLG2B, ATSYP42, ATTLG2B | SYP42 (SYNTAXIN OF PLANTS 42); SNAP receptor
Coordinates
chrA09:+:318141..319976
Molecular Weight (calculated)
32116.8 Da
IEP (calculated)
6.414
GRAVY (calculated)
-0.755
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTTVY RKHRDACKSA RAPLSDSFGG PVIEMVSGSF ARSNHSSYAP LSTNDPGPSS SNDAFTIGLP PAWVDDSEEI TFNIQKVREK MGELAKAHSK
101: ALMPTFGDNK GDQRAVEMIT HEITDLLRKS EKRLHNLSTR GGGPSEESNL RKNVQRSLAT DLQSLSMELR RKQSTYLKRL QQQKEGQDGV DLEFNMNGKM
201: SRMDEDEELG GMGFDEHQTV TLKEGQHVSA EREREIQQVL GSVNDLAQIM KDLSALVIDQ GTIVDRIDYN IQNVSTSVGE GYKQLQKV
101: ALMPTFGDNK GDQRAVEMIT HEITDLLRKS EKRLHNLSTR GGGPSEESNL RKNVQRSLAT DLQSLSMELR RKQSTYLKRL QQQKEGQDGV DLEFNMNGKM
201: SRMDEDEELG GMGFDEHQTV TLKEGQHVSA EREREIQQVL GSVNDLAQIM KDLSALVIDQ GTIVDRIDYN IQNVSTSVGE GYKQLQKV
001: MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
Arabidopsis Description
SYP42Syntaxin-42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWH4]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.