Factsheet for Solyc09g075530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 2
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097870.2.1
Solyc01g104470.2.1
Solyc02g032250.1.1
Solyc02g071330.2.1
Solyc02g086240.2.1
Solyc03g111230.2.1
Solyc04g064820.2.1
Solyc04g080150.1.1
Solyc04g081570.2.1
Solyc06g071870.2.1
Solyc06g071880.2.1
Solyc06g073790.2.1
Solyc06g073800.2.1
Solyc06g084230.2.1
Solyc07g054170.2.1
Solyc07g055230.2.1
Solyc07g063890.2.1
Solyc09g031760.1.1
Solyc09g065330.2.1
Solyc10g006580.2.1
Solyc10g007980.2.1
Solyc10g008440.2.1
Solyc10g079000.1.1
Solyc11g066160.1.1
Solyc12g005330.1.1
Solyc12g010930.1.1
Solyc12g042080.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02195.1	Solyc09g031760.1.1	AT1G02780.1	24556609
AT4G02195.1	Solyc01g104470.2.1	AT1G25260.1	24556609
AT4G02195.1	Solyc03g111230.2.1	AT1G27400.1	24556609
AT4G02195.1	Solyc06g071870.2.1	AT1G27400.1	24556609
AT4G02195.1	Solyc06g071880.2.1	AT1G27400.1	24556609
AT4G02195.1	Solyc02g032250.1.1	AT1G72900.1	24556609
AT4G02195.1	Solyc04g064820.2.1	AT1G77140.1	10888666
AT4G02195.1	Solyc04g064820.2.1	AT1G77140.1	24556609
AT4G02195.1	Solyc07g063890.2.1	AT2G18020.1	24556609
AT4G02195.1	Solyc10g006580.2.1	AT2G18020.1	24556609
AT4G02195.1	Solyc12g005330.1.1	AT2G18020.1	24556609
AT4G02195.1	Solyc11g066160.1.1	AT2G28740.1	24556609
AT4G02195.1	Solyc02g086240.2.1	AT2G42740.1	24556609
AT4G02195.1	Solyc04g080150.1.1	AT2G42740.1	24556609
AT4G02195.1	Solyc07g055230.2.1	AT2G42740.1	24556609
AT4G02195.1	Solyc10g007980.2.1	AT2G42740.1	24556609
AT4G02195.1	Solyc12g010930.1.1	AT2G42740.1	24556609
AT4G02195.1	Solyc01g097870.2.1	AT3G04920.1	24556609
AT4G02195.1	Solyc06g084230.2.1	AT3G04920.1	24556609
AT4G02195.1	Solyc09g065330.2.1	AT3G04920.1	24556609
AT4G02195.1	Solyc10g079000.1.1	AT3G12030.1	24556609
AT4G02195.1	Solyc06g073790.2.1	AT3G48930.1	24556609
AT4G02195.1	Solyc06g073800.2.1	AT3G48930.1	24556609
AT4G02195.1	Solyc12g042080.1.1	AT3G48930.1	24556609
AT4G02195.1	Solyc02g071330.2.1	AT4G18060.1	24556609
AT4G02195.1	Solyc04g081570.2.1	AT4G24190.1	24556609
AT4G02195.1	Solyc07g054170.2.1	AT4G28250.1	24556609
AT4G02195.1	Solyc10g008440.2.1	AT4G28250.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081334	Potato	mitochondrion	87.15	86.88
VIT_07s0005g01000.t01	Wine grape	mitochondrion	69.28	69.5
KRH68233	Soybean	plastid	66.14	65.94
TraesCS7D01G044300.1	Wheat	cytosol	48.9	65.55
CDX97432	Canola	extracellular, vacuole	5.33	65.38
KRG96492	Soybean	plastid	66.14	65.12
Zm00001d039404_P001	Maize	plasma membrane	64.26	63.47
Solyc01g100170.2.1	Tomato	mitochondrion	64.26	63.27
OQU86127	Sorghum	mitochondrion	64.58	63.19
TraesCS7A01G049200.1	Wheat	mitochondrion	64.89	63.11
Zm00001d013996_P003	Maize	mitochondrion	63.01	62.81
GSMUA_Achr11P...	Banana	mitochondrion	63.32	62.15
Os06t0116300-01	Rice	plasma membrane	64.26	62.12
GSMUA_Achr10P...	Banana	mitochondrion	62.07	60.0
CDY22037	Canola	mitochondrion	60.19	59.63
GSMUA_Achr4P18460_001	Banana	mitochondrion	62.38	59.4
CDY52786	Canola	mitochondrion	59.87	59.32
AT4G02195.1	Thale cress	cytosol, mitochondrion, plastid	58.62	57.89
Bra036287.1-P	Field mustard	cytosol, mitochondrion	52.04	57.64
EER87742	Sorghum	mitochondrion	42.63	57.14
HORVU7Hr1G008670.5	Barley	mitochondrion	64.26	56.63
TraesCS4A01G435000.1	Wheat	mitochondrion	57.68	56.1
Zm00001d045530_P001	Maize	cytosol	15.05	53.33
HORVU7Hr1G008640.2	Barley	mitochondrion	40.75	50.0

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.4	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0006950
GO:GO:0007030	GO:GO:0007034	GO:GO:0008150	GO:GO:0009306	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048278	GO:GO:1900150	InterPro:IPR000727	UniProt:K4CVD0	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF83	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	EnsemblPlantsGene:Solyc09g075530.2	EnsemblPlants:Solyc09g075530.2.1	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000276BB66	SEG:seg	:	:

Description

Syntaxin-42 [Source:Projected from Arabidopsis thaliana (AT4G02195) UniProtKB/Swiss-Prot;Acc:Q9SWH4]

Coordinates

chr9:+:67229428..67233655

Molecular Weight (calculated)

35786.9 Da

IEP (calculated)

5.816

GRAVY (calculated)

-0.362

Length

319 amino acids

Sequence
(BLAST)

001: MATRNRIRVF QSYRDTLNEN RIPFTTSKDS GGPVIEMATT SFLNSNRSYA PLSTEDDLGP STSRDAFTLG LPPAWVDVSE EVAASIHQAQ VKLADLKKCH
101: AKALTPSFGD GREDQNVIEV LTMEITDILR KSQKKLQKLS ASGSCEDSNV RKNVQRSLAT DLQNLSVELR RMQSLYLKQL RLQSEGHDGL DLEMNEKKSS
201: FLDDDFNDVG FTELQMATGQ KDEQFTAERE REIRQVLKSV NELAQIMKDL SVLVIDQGTI VDRIDHNVQS VSASVEEGFK QLQKAERSQR KGGMVKCATI
301: LVIMCFVMLV LLVLKQILL

Best Arabidopsis Sequence Match ( AT3G05710.1 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSRGTITV GLPPDWVDVS EEISVYIQRA
101: RTKMAELGKA HAKALMPSFG DGKEDQHQIE TLTQEVTFLL KKSEKQLQRL SAAGPSEDSN VRKNVQRSLA TDLQNLSMEL RKKQSTYLKR LRLQKEDGAD
201: LEMNLNGSRY KAEDDDFDDM VFSEHQMSKI KKSEEISIER EKEIQQVVES VSELAQIMKD LSALVIDQGT IVDRIDYNIQ NVASTVDDGL KQLQKAERTQ
301: RQGGMVMCAS VLVILCFIML VLLILKEILL

Arabidopsis Description

SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.