Factsheet for Solyc04g064820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
golgi 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g100170.2.1
Solyc03g115760.2.1
Solyc09g075530.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	Solyc09g075530.2.1	AT4G02195.1	10888666
AT1G77140.1	Solyc01g100170.2.1	AT5G26980.1	10888666
AT1G77140.1	Solyc03g115760.2.1	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g15600.t01	Wine grape	cytosol	87.5	87.5
CDX79189	Canola	cytosol	42.08	86.91
KRH53395	Soybean	cytosol	85.74	85.74
Bra008294.1-P	Field mustard	cytosol	85.74	85.59
KRH64544	Soybean	endoplasmic reticulum	85.56	85.56
CDY38360	Canola	cytosol	85.56	85.41
AT1G77140.1	Thale cress	cytosol	85.56	85.41
CDY70457	Canola	cytosol	53.52	84.92
GSMUA_Achr10P...	Banana	cytosol	82.57	83.01
CDX79215	Canola	cytosol	56.34	77.29
TraesCS2D01G259600.1	Wheat	cytosol	76.58	76.72
TraesCS2B01G277800.2	Wheat	cytosol	76.41	76.54
TraesCS2A01G264300.1	Wheat	cytosol	76.41	76.54
EES13788	Sorghum	cytosol	75.88	76.01
Os02t0437800-02	Rice	cytosol, plasma membrane	75.7	75.84
CDY13575	Canola	cytosol	75.7	75.04
HORVU2Hr1G062800.7	Barley	cytosol, plastid	76.23	68.95
Zm00001d049522_P001	Maize	cytosol, plasma membrane	76.58	68.72
CDX79222	Canola	cytosol, mitochondrion	24.12	50.55
Solyc01g112150.2.1	Tomato	plastid	20.07	18.39
Solyc08g079520.2.1	Tomato	nucleus	20.77	17.72
Solyc10g074510.1.1	Tomato	cytosol	1.76	16.39
Solyc10g074520.1.1	Tomato	cytosol	8.63	16.23
Solyc01g091300.2.1	Tomato	nucleus	14.61	15.81
Solyc01g091290.2.1	Tomato	cytosol, unclear	4.93	15.05

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0006904	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987
GO:GO:0016020	GO:GO:0016192	InterPro:IPR027482	UniProt:K4BT73	PFAM:PF00995	PIRSF:PIRSF005715
PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf
EnsemblPlantsGene:Solyc04g064820.2	EnsemblPlants:Solyc04g064820.2.1	UniParc:UPI000276663D	SEG:seg	:	:

Description

Vacuolar protein sorting-associated protein 45 homolog [Source:Projected from Arabidopsis thaliana (AT1G77140) UniProtKB/Swiss-Prot;Acc:O49048]

Coordinates

chr4:+:55985376..56000973

Molecular Weight (calculated)

64976.5 Da

IEP (calculated)

7.791

GRAVY (calculated)

-0.267

Length

568 amino acids

Sequence
(BLAST)

001: MVLVAAVRDY INRILQDISG MKVLILDSST VSSVSVVYSQ SELLKKEVFL VELVDSIAMS KESMSHLKAV YFLRPTSENI QHMRRQLAKP RFGEYHLFFS
101: NILKDTQLHM LADSDEHEVV QQLQEFYADF VALDPYHFTL NMAANHMYML PAVVDPSGLQ QFCDRIVDGM SAVFLALKRR PIIRYSRTSD IAKRIAHEAS
201: KLMYQQESGL FDFRRTEVSP LLLIIDRRDD PVTALLNQWT YQAMVHELIG IQDNKVNLKN VGKLPKDQQE VVLSSEQDAF FKANMYENFG DIGMNIKKMV
301: DDFQQVAKSN QNIQTIEDMA KFVDNYPEYR KMQGNVSKHV TLVTEMSKIV EERKLMLVSQ TEQELACNGG QGAAFEAVTN LLNNDNISDV DRLRLVMLYA
401: LRYEKESPVQ LMQLFNKLAS RSPKYKPGLV QFLLKQAGVD KRTGDLYGNR DLLNIARNMA RGLKGVENVY TQHQPLLFQT MENITRGRLR DVDYPYVGNH
501: FQQARPQEVV IFVVGGTTYE ESRSVALQNS TNSGIRFILG GSSLLNSKRF LKDLEEAQRI ARISTNML

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.