Factsheet for Os02t0437800-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0116300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	Os06t0116300-01	AT4G02195.1	10888666
AT1G77140.1	Os06t0116300-01	AT5G26980.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G259600.1	Wheat	cytosol	92.24	92.24
TraesCS2B01G277800.2	Wheat	cytosol	92.24	92.24
TraesCS2A01G264300.1	Wheat	cytosol	92.24	92.24
EES13788	Sorghum	cytosol	91.89	91.89
HORVU2Hr1G062800.7	Barley	cytosol, plastid	91.89	82.96
Zm00001d049522_P001	Maize	cytosol, plasma membrane	92.06	82.46
GSMUA_Achr10P...	Banana	cytosol	80.95	81.24
VIT_18s0001g15600.t01	Wine grape	cytosol	78.48	78.35
KRH64544	Soybean	endoplasmic reticulum	77.78	77.64
KRH53395	Soybean	cytosol	77.78	77.64
CDX79189	Canola	cytosol	37.39	77.09
Bra008294.1-P	Field mustard	cytosol	77.07	76.8
CDY38360	Canola	cytosol	76.9	76.63
AT1G77140.1	Thale cress	cytosol	76.37	76.1
Solyc04g064820.2.1	Tomato	cytosol, nucleus	75.84	75.7
CDY70457	Canola	cytosol	47.09	74.58
CDX79215	Canola	cytosol	50.62	69.32
VIT_03s0038g00020.t01	Wine grape	cytosol	8.82	68.49
CDY13575	Canola	cytosol	67.55	66.84
CDX79223	Canola	cytosol, plastid	7.05	60.61
CDX79222	Canola	cytosol, mitochondrion	20.81	43.54
CDY71507	Canola	cytosol, golgi	21.52	41.08
Os02t0452500-01	Rice	cytosol, plasma membrane	4.06	20.0
Os03t0620800-01	Rice	plasma membrane	20.46	18.62
Os06t0135900-01	Rice	plasma membrane	16.4	17.82
Os04t0252400-01	Rice	plasma membrane	4.06	17.56
Solyc10g074520.1.1	Tomato	cytosol	8.47	15.89
Solyc10g074510.1.1	Tomato	cytosol	1.59	14.75

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	EntrezGene:4329228
ProteinID:BAD16956.1	ProteinID:BAF08653.1	ProteinID:BAS78466.1	ProteinID:EEE56893.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810
GO:GO:0006886	GO:GO:0006904	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0016020
GO:GO:0016192	InterPro:IPR027482	EnsemblPlantsGene:Os02g0437800	EnsemblPlants:Os02t0437800-02	PFAM:PF00995	PIRSF:PIRSF005715
PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	UniProt:Q6ZGF2	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	UniParc:UPI000035AD6B	RefSeq:XP_015626420.1	SEG:seg	:	:

Description

Similar to vacuolar protein-sorting protein 45. (Os02t0437800-01);Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45). (Os02t0437800-02);Similar to vacuolar protein-sorting protein 45. (Os02t0437800-03)

Coordinates

chr2:-:13977651..13987361

Molecular Weight (calculated)

64768.9 Da

IEP (calculated)

7.161

GRAVY (calculated)

-0.245

Length

567 amino acids

Sequence
(BLAST)

001: MTLITLIRDY IDRMLHDIPG MKVLVLDPDT VGMVSVVYSQ SDLLRKEVFL VETVDNASSS RESMAHLKAV YFLRPSSDNV QKLRRHLAAP RFAEYHLFFS
101: NVLKIPQIQV LADSDEQEVV QQVQEFYADF CAIDPYHFTL NIRNNHVYML PMVVDPPGMQ SFCDRAVDGI ASVFLALKRR PVIRYQRTSD VAKRIAQETA
201: RLMYEQESGL FDFRRTENSS LLLVIDRRDD PVTPLLNQWT YQAMVHELIG IENNKVDLRE YPNVPKDQKE VVLSSVQDEF FRANMFENFG DLGMNIKRMV
301: DDFQHLSKTS QNIQSISDMS KFLSNYPEYR KTHGNVTKHV ALVSEMSRIV EERKIMLISQ TEQELACTSG QAAAFEAVTS LLNNESVSDI DRLRLVLLYA
401: LRYEKESPVQ LMQLFNKLAS RSAKYKSGLV QFLLKQAGVD KRTGDLYGNR DLLNIARNMA RGLKGVENVY TQHQPLLFQT MEGIVKARLR DADYPLVGNH
501: FQQNRPQDVV LFIVGGTTYE EARSVALYNA ANPGVRFFLG GSVVLNSKRF LDDLGEAQRI SKSSSLV

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.