Factsheet for Os03t0620800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G045800.1	Wheat	plastid	86.36	86.77
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	86.52	86.66
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	86.2	86.61
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	85.71	83.31
Zm00001d030527_P001	Maize	cytosol, mitochondrion	80.1	80.35
OQU91892	Sorghum	cytosol, mitochondrion	80.26	80.13
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	53.13	67.97
GSMUA_Achr3P26940_001	Banana	cytosol	58.91	64.84
CDY52164	Canola	cytosol	5.62	64.81
KRH58359	Soybean	endoplasmic reticulum	62.6	62.7
Solyc01g112150.2.1	Tomato	plastid	62.28	62.58
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.18	62.57
PGSC0003DMT400038058	Potato	cytosol	62.12	62.42
KRH42240	Soybean	endoplasmic reticulum, nucleus	62.12	62.22
AT2G17980.1	Thale cress	mitochondrion	62.6	62.2
CDY63506	Canola	cytosol	59.87	61.96
CDY29213	Canola	cytosol	59.87	61.96
VIT_03s0038g03110.t01	Wine grape	cytosol	59.07	61.95
Bra024484.1-P	Field mustard	cytosol	62.12	60.75
PGSC0003DMT400043339	Potato	cytosol	30.66	58.23
CDY52165	Canola	cytosol	32.26	55.83
CDY39875	Canola	cytosol	27.61	52.6
CDY48989	Canola	cytosol	25.36	51.3
Bra032934.1-P	Field mustard	cytosol	25.2	50.48
Os02t0452500-01	Rice	cytosol, plasma membrane	3.85	20.87
Os02t0437800-02	Rice	cytosol, plasma membrane	18.62	20.46
Os04t0252400-01	Rice	plasma membrane	4.17	19.85
Os06t0135900-01	Rice	plasma membrane	14.77	17.62

Protein Annotations

Gene3D:1.25.40.60	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1	EntrezGene:4333468
ProteinID:AAO34501.1	ProteinID:ABF97669.1	EMBL:AK071474	ProteinID:BAF12591.1	ProteinID:BAS85305.1	ncoils:Coil
ProteinID:EAZ27812.1	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0016192	InterPro:IPR027482	EnsemblPlantsGene:Os03g0620800	EnsemblPlants:Os03t0620800-01	PFAM:PF00995	PIRSF:PIRSF005715
PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	UniProt:Q851W1	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	UniParc:UPI00000027AE	RefSeq:XP_015632234.1	SEG:seg	:	:

Description

SLY1Similar to SEC1-family transport protein SLY1 (AtSLY1). (Os03t0620800-01);Similar to SEC1 family transport protein SLY1. (Os03t0620800-02)

Coordinates

chr3:-:23545490..23547647

Molecular Weight (calculated)

67820.3 Da

IEP (calculated)

5.979

GRAVY (calculated)

-0.106

Length

623 amino acids

Sequence
(BLAST)

001: MALTLRKKQL DSIVRMLHLN QQLQGSPDGV GGGVGSAEEE EAYKILVMDS PCVALLAPVL RVGELRRHGV TLHLNIDKAR QQVPDAPAVY LLRPTAANVD
101: RVAADAAAGL YASFHLNFST CVPRALLERL ASATAASRSA HRVARVADQY LDFVCLEEGL FSLAQPRAYV ALNDPAAAEA DITALVDAIA LGLFCVVATL
201: GAVPVIRCAG GGPAEMVAAA LDARLRDHLI AKPNLFTEAA STAVASFQRP LLCLFDRNFE LSVGIQHDWS YRPLVHDVLG LKSNKLKLPE KYDLDDTDPF
301: WVANSWLQFP KVAEEIEAQL AKYKQDVDEV NQRTGGGRDG VEFDGTDLIG NTRHLMNAVN SLPELTERKK MIDKHTNIAT ALLGHIKGRS LDGYFECENS
401: MLVDGTLDRT KLMNLLRGNG TKEDKLRLAV TYLLSFETPV PSDLEQVEAA LRESEVDMSA FQYVKRIKSL NSQFAGASNT ASKVNIVDWA EKLYGHSISA
501: MTGVRNLLSD GKQLAATRAV EALMEGKPNP EVDNYLLFDP RAPKSGTAGQ FRGPFREAIV FMIGGGNYIE YRSLTELTQR SQTTKQVIYG ATEILNGVEF
601: IQQLSELGQK AGLGGVSSSL PPQ

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.