Factsheet for GSMUA_Achr3P26940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043339	Potato	cytosol	40.11	69.21
VIT_03s0038g03110.t01	Wine grape	cytosol	70.67	67.34
PGSC0003DMT400038058	Potato	cytosol	72.44	66.13
Solyc01g112150.2.1	Tomato	plastid	72.44	66.13
KRH58359	Soybean	endoplasmic reticulum	70.49	64.15
CDY29213	Canola	cytosol	68.02	63.95
KRH42240	Soybean	endoplasmic reticulum, nucleus	70.14	63.83
CDY63506	Canola	cytosol	67.84	63.79
CDY52164	Canola	cytosol	6.01	62.96
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	68.73	62.74
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	69.26	62.62
TraesCS5D01G045800.1	Wheat	plastid	68.55	62.58
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	68.55	62.38
Zm00001d051824_P001	Maize	plasma membrane	68.37	61.62
AT2G17980.1	Thale cress	mitochondrion	67.67	61.08
Bra024484.1-P	Field mustard	cytosol	68.37	60.75
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	68.37	60.37
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.2	60.23
OQU91892	Sorghum	cytosol, mitochondrion	66.25	60.1
Zm00001d030527_P001	Maize	cytosol, mitochondrion	64.66	58.94
Os03t0620800-01	Rice	plasma membrane	64.84	58.91
CDY39875	Canola	cytosol	31.63	54.74
CDY52165	Canola	cytosol	32.33	50.83
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	42.58	49.49
CDY48989	Canola	cytosol	24.91	45.78
Bra032934.1-P	Field mustard	cytosol	24.73	45.02
GSMUA_Achr7P16530_001	Banana	nucleus	21.38	18.2
GSMUA_Achr7P16520_001	Banana	cytosol	21.38	18.11
GSMUA_Achr10P...	Banana	cytosol	17.84	17.88
GSMUA_Achr9P24460_001	Banana	cytosol	20.14	17.19

Protein Annotations

Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1	ncoils:Coil	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	EnsemblPlantsGene:GSMUA_Achr3G26940_001	EnsemblPlants:GSMUA_Achr3P26940_001
EnsemblPlants:GSMUA_Achr3T26940_001	InterPro:IPR027482	UniProt:M0SI60	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679
PANTHER:PTHR11679:SF60	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0002952707

Description

SEC1 family transport protein SLY1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G26940_001]

Coordinates

chr3:-:26590655..26592916

Molecular Weight (calculated)

62939.3 Da

IEP (calculated)

5.563

GRAVY (calculated)

-0.278

Length

566 amino acids

Sequence
(BLAST)

001: MALNLRQKQT NHIVRMLNLN QPPNPGGGIS SGAGANEEVY KILIMDAFCR GVLSPLIRVN DLRKHGVTLY FGIDKERQKV PDVPAIYFVR ATPDNVERIA
101: ADAGRGLYDS FHLNFSSSLP RPLLEDLARR TLEKDAVHRI SKVYDQYLEF VSLENGFFSL AQPKTYVQIN DPSAGEREIE DILEKIVSGL FCVLATLGVV
201: PVIRCARGGP AEMVASALDA RLRDHLVTRN NLFMEGAGLT SSFQRPILCL FDRNFELSVG IQHDWNYRPL IHDVLGIKLN RVTMPAEKSA VKSYELDDSD
301: PFWVANSWSP FQKVAEEIEI QLSKYKQDAD EVNRRTAGKD GAEFEGTYHI GDTKHLANAI NSLPELTERK MIIDKHTNIA TVLLGEIKER SLDAYCTLET
401: DMLTKGSVDR TEVESIETAL RDSSSRSNIV DWAEKLYGQS ISAVTAGMKN LLSGGRELAL TRTVEDLMEG KPNPEVDSYL IFDPRAPKTG SGVQLKGPFK
501: EAIVFMIGGG NYVEYRSLME LAQRSQPVKH VIYGTTELLN GTEFVEQLTE LGQKMGLGNS GVTPPQ

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.