Factsheet for Zm00001d051824_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 4
endoplasmic reticulum 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	94.59	94.89
Zm00001d030527_P001	Maize	cytosol, mitochondrion	77.39	78.26
GSMUA_Achr3P26940_001	Banana	cytosol	61.62	68.37
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	52.39	67.56
Solyc01g112150.2.1	Tomato	plastid	65.61	66.45
KRH58359	Soybean	endoplasmic reticulum	65.76	66.4
PGSC0003DMT400038058	Potato	cytosol	65.45	66.29
KRH42240	Soybean	endoplasmic reticulum, nucleus	65.29	65.92
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.83	65.5
CDY52164	Canola	cytosol	5.57	64.81
VIT_03s0038g03110.t01	Wine grape	cytosol	61.31	64.81
CDY63506	Canola	cytosol	60.99	63.62
CDY29213	Canola	cytosol	60.67	63.29
AT2G17980.1	Thale cress	mitochondrion	62.9	63.0
Bra024484.1-P	Field mustard	cytosol	62.9	62.01
PGSC0003DMT400043339	Potato	cytosol	32.32	61.89
CDY52165	Canola	cytosol	32.48	56.67
CDY39875	Canola	cytosol	28.66	55.05
CDY48989	Canola	cytosol	25.8	52.6
Bra032934.1-P	Field mustard	cytosol	25.8	52.09
Zm00001d004159_P003	Maize	cytosol, plastid	20.54	19.2
Zm00001d049522_P001	Maize	cytosol, plasma membrane	19.27	19.12
Zm00001d015890_P002	Maize	cytosol	20.54	18.97
Zm00001d045434_P004	Maize	cytosol	18.31	16.69

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100280268	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1
ProteinID:AQK55183.1	UniProt:B6SSJ8	EMBL:BT060575	ncoils:Coil	EMBL:EU955713	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	PFAM:PF00995
PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	UniParc:UPI000182B452	EnsemblPlantsGene:Zm00001d051824	EnsemblPlants:Zm00001d051824_P001	EnsemblPlants:Zm00001d051824_T001	SEG:seg

Description

SEC1 family transport protein SLY1

Coordinates

chr4:-:171070766..171073109

Molecular Weight (calculated)

68343.7 Da

IEP (calculated)

6.335

GRAVY (calculated)

-0.144

Length

628 amino acids

Sequence
(BLAST)

001: MAALSLRQRQ LDLIVRMLHL NKPPPPPGTA AEQEEEVYKI LVLDSFCLSL LSPLLRVADL RKHGVTLYFP IDKPRQQVAD APAVYFLRPT QANADRVAAD
101: AAASLYASFH LNFSSALPRP LLDRLAAATA ASGSAHRVAR LADQYLDFVS LEDNLFSLAH PRSYVALNDP KAADADIEAL VDAIALGLFC AAATLGTVPV
201: IRCPRGGPAE MVAAALDARL RHHLLAKPNL FTEASASASV ASFQRPVLCL FDRNLDLSVG IQHDWSYRPL VHDVLGLKLN KLKMPADKSG PAKAYDLDDS
301: DAFWVANSWS PFPRVAEEIE SQLAKYKQDV DEVNQRTGGN KDGIEFDGTD LIGNTQHLMN AVNSLPELTE RKKMIDKHTN IATALLGHIK ERSLDGYCDC
401: GNDMLTKGTV DRSTLLGLLR GKGTKADKLR LAVTYLLCFE TPELEQVEAA LRESEVDMSA FQYVKRIKSL NTQFSASSSS SATRSNIVDW AEKLYGQSIS
501: AVTAGVKNLL SSGRQLALTR TVEALMEGKP NPEVDNYLLF DPRAPRSGSG GQFKGPFREA IVFMIGGGNY IEYRSLMELA ECSQPPSSKH VIYGATEIVN
601: GVEFIEQLAE LGQKAGLGLG GGNNPPLQ

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.