Factsheet for VIT_03s0038g03110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038058	Potato	cytosol	87.37	83.71
PGSC0003DMT400043339	Potato	cytosol	46.13	83.54
Solyc01g112150.2.1	Tomato	plastid	86.7	83.06
KRH58359	Soybean	endoplasmic reticulum	86.53	82.64
KRH42240	Soybean	endoplasmic reticulum, nucleus	85.86	81.99
CDY63506	Canola	cytosol	78.96	77.91
CDY29213	Canola	cytosol	78.62	77.57
Bra024484.1-P	Field mustard	cytosol	81.14	75.67
AT2G17980.1	Thale cress	mitochondrion	79.29	75.12
GSMUA_Achr3P26940_001	Banana	cytosol	67.34	70.67
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.53	67.84
TraesCS5D01G045800.1	Wheat	plastid	65.99	63.23
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	65.99	63.23
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	66.33	62.94
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	65.82	62.86
Zm00001d051824_P001	Maize	plasma membrane	64.81	61.31
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	65.82	61.0
OQU91892	Sorghum	cytosol, mitochondrion	62.96	59.94
Zm00001d030527_P001	Maize	cytosol, mitochondrion	61.78	59.1
CDY48989	Canola	cytosol	30.64	59.09
Os03t0620800-01	Rice	plasma membrane	61.95	59.07
Bra032934.1-P	Field mustard	cytosol	30.81	58.84
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	43.1	52.57
VIT_13s0019g05000.t01	Wine grape	cytosol	21.04	18.8
VIT_18s0001g15600.t01	Wine grape	cytosol	17.68	18.49
VIT_15s0048g00970.t01	Wine grape	cytosol	18.52	17.8
VIT_15s0045g00060.t01	Wine grape	cytosol	12.79	16.67
VIT_03s0038g00020.t01	Wine grape	cytosol	1.68	13.7

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100253743	wikigene:100253743	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10
MapMan:35.1	EMBL:AM459952	ProteinID:CAN83258	ProteinID:CAN83258.1	ProteinID:CCB60579	ProteinID:CCB60579.1
ncoils:Coil	UniProt:F6I0W3	EMBL:FN596508	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150
GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	EntrezGene:LOC100253743	wikigene:LOC100253743	PFAM:PF00995
PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	UniParc:UPI00021094C0	ArrayExpress:VIT_03s0038g03110	EnsemblPlantsGene:VIT_03s0038g03110	EnsemblPlants:VIT_03s0038g03110.t01	RefSeq:XP_002278576
RefSeq:XP_002278576.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:2225380..2228485

Molecular Weight (calculated)

66336.5 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.264

Length

594 amino acids

Sequence
(BLAST)

001: MALNLRQKQT ECITRMLNLN QPVNSTGTAN EEVYKILIYD KYCQNMLSPL IHVKDLRKHG VTLYFLIDKD RKPVHDVPAV YFVQPNQSNI QRIVNDASHS
101: LYDSFHLNFS SSIPRPLLED LASGMLNSDS INRISKVHDQ YLEFVTLEEN LFSLAQKSSY VQLNDPSAGD REIEEIIEKI VSGLFCVLAT LAVVPIIRCP
201: RGGPAEMVAS ALDQRMRDHL LSKNNLFSEG GNFASSFQRP ILCIFDRTFE LSVGIQHDFR YRPLVHDVLG LKLNRLSVPG EKGGMRSYEL DSFDPFWVAN
301: GSLEFPEVAI EIETQLNKYK KDVDEVNRRT GGNAEEFDGQ DLIGNTKHLM NAVNSLPELT ERKQVIDKHT NIATVLLGEI KERSLDSYAK KEYDMMVRGG
401: IDRNELLSVL KGKGTKMDKL RFAIMFLIST ESIPQSEIKS LNVSLASANS ASRSNIVDWA EKLYGQSISA VTAGVKNLLS NDRQLALTRT VDALMEGRPN
501: PEIDSYVLYD PRAPKSSSGA SHLKGPFKEA IVFMIGGGNY VEYGSLQELA LRQQPVKHVI YGTTEILTGA EFVEQLSLLG QKMGLGSSSA PPTH

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.