CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58359	Soybean	endoplasmic reticulum	98.07	98.07
VIT_03s0038g03110.t01	Wine grape	cytosol	81.99	85.86
PGSC0003DMT400043339	Potato	cytosol	44.69	84.76
PGSC0003DMT400038058	Potato	cytosol	84.41	84.68
Solyc01g112150.2.1	Tomato	plastid	83.76	84.03
CDY29213	Canola	cytosol	75.88	78.41
CDY63506	Canola	cytosol	75.88	78.41
Bra024484.1-P	Field mustard	cytosol	79.26	77.39
AT2G17980.1	Thale cress	mitochondrion	77.33	76.71
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.26	73.68
GSMUA_Achr3P26940_001	Banana	cytosol	63.83	70.14
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	67.04	66.61
TraesCS5D01G045800.1	Wheat	plastid	65.11	65.32
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	65.11	65.32
Zm00001d051824_P001	Maize	plasma membrane	65.92	65.29
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	65.11	65.11
OQU91892	Sorghum	cytosol, mitochondrion	63.67	63.46
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	65.11	63.18
Zm00001d030527_P001	Maize	cytosol, mitochondrion	62.22	62.32
Os03t0620800-01	Rice	plasma membrane	62.22	62.12
CDY48989	Canola	cytosol	29.42	59.42
Bra032934.1-P	Field mustard	cytosol	29.42	58.84
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	42.12	53.8
KRH53395	Soybean	cytosol	18.17	19.89
KRH64544	Soybean	endoplasmic reticulum	18.01	19.72
KRH76261	Soybean	nucleus	19.61	18.21
KRH65274	Soybean	cytosol	19.29	17.94
KRH57307	Soybean	cytosol, nucleus	19.13	17.89
KRH28021	Soybean	nucleus	18.81	17.65
KRH04038	Soybean	cytosol	18.81	17.57
KRH77416	Soybean	cytosol	18.65	17.08

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100795213	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1
EMBL:ACUP02004791	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G077800	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150
GO:GO:0009987	GO:GO:0016192	UniProt:I1KR84	InterPro:IPR027482	EnsemblPlants:KRH42240	ProteinID:KRH42240
ProteinID:KRH42240.1	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI00023386CE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:5915233..5917804

Molecular Weight (calculated)

68800.4 Da

IEP (calculated)

6.465

GRAVY (calculated)

-0.202

Length

622 amino acids

Sequence
(BLAST)

001: MSLNLRQKQT ECIARMLNLN QPLNAAGTAN EDVYKILIYD KFCQNILSPL IHVKDLRKHG VTLYFLIDKD RKPVHDVPAV YFVQPNVSNV QRIVSDASKS
101: LYQSLHLNFS TSIPRPLLED LAAGTLNSDS IQRVSKVHDQ YLEFVTLEDN LFSLAHKPCY VQLNDPSAGD KEIEELVEKI VGGLFCVLAT LAVVPVIRCP
201: RGGPAEMVAS ALDQRIRDHL LSKNNLFTEG GNFVSSFQRP VLCIFDRNFE LPVAIQHDFR YRPLVHDVLG LRLNRLSVQG EKGGMRSYEL DSADSFWVAN
301: GSLEFPEVAV EIETQLNKYK KDVDEVNKRT GGTHGAEFDG TDLIGNTKHL MNAVNSLPEL TERKQVIDKH TNIATVLLGE IKERSLDSYA KKENDMMVRG
401: GIERGDLLGV LRGKGTKMDK LRFAIIYLIS SETINLSEVE AVEAALRESE VDTAAFQYVK KIKSLNVSLA SANSASRSNI VDWAEKLYGQ SISAVTAGVK
501: NLLSNDRQLA LARTVEALIE GRTNPETDVY LSFDPRAPKS GSGASSSHLK GPFKEAIVFM IGGGNYVEYC SLQELAQHQQ PAKHIIYGTT EMLTGVDFVE
601: QLTLLGQKMG LGNVGSSSTP AQ

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.