Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH72169 | Soybean | cytosol | 94.58 | 93.73 |
| Solyc01g006950.2.1 | Tomato | nucleus | 66.57 | 73.67 |
| PGSC0003DMT400054965 | Potato | cytosol | 65.66 | 72.67 |
| CDY01061 | Canola | cytosol, plastid | 73.19 | 72.54 |
| Bra001422.1-P | Field mustard | cytosol | 72.29 | 72.07 |
| CDY70958 | Canola | cytosol | 72.29 | 72.07 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 70.18 | 71.91 |
| CDX73851 | Canola | cytosol | 72.29 | 71.86 |
| KRH72168 | Soybean | cytosol | 65.36 | 71.15 |
| CDY08492 | Canola | cytosol | 72.59 | 71.09 |
| PGSC0003DMT400072325 | Potato | cytosol | 64.46 | 70.86 |
| Solyc10g081850.1.1 | Tomato | cytosol | 64.46 | 70.63 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 68.98 | 70.46 |
| KRH32862 | Soybean | cytosol | 64.76 | 70.26 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 72.29 | 69.36 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 53.61 | 64.96 |
| Bra033436.1-P | Field mustard | cytosol | 66.27 | 64.33 |
| CDY23212 | Canola | cytosol | 66.27 | 64.14 |
| AT3G52400.1 | Thale cress | cytosol | 65.06 | 63.34 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 58.13 | 62.66 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 62.95 | 62.57 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 63.25 | 62.5 |
| KRH21567 | Soybean | cytosol | 56.02 | 61.18 |
| KRH41917 | Soybean | cytosol | 55.72 | 60.86 |
| KRH10761 | Soybean | cytosol | 55.42 | 60.53 |
| EER93336 | Sorghum | cytosol | 55.12 | 59.61 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 53.31 | 58.8 |
| Zm00001d034365_P001 | Maize | plasma membrane | 53.92 | 58.5 |
| Os03t0787000-01 | Rice | plasma membrane | 57.53 | 57.88 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 54.82 | 57.41 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 54.82 | 56.88 |
| KRH68016 | Soybean | cytosol | 50.3 | 56.8 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 54.52 | 56.39 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 52.71 | 56.27 |
| CDX95336 | Canola | cytosol | 17.47 | 55.24 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 39.46 | 51.37 |
| KRH22542 | Soybean | endoplasmic reticulum, extracellular, mitochondrion | 41.27 | 44.77 |
| Zm00001d013115_P001 | Maize | cytosol | 19.58 | 44.52 |
| KRH08507 | Soybean | cytosol | 40.96 | 44.16 |
| KRH26811 | Soybean | cytosol | 40.66 | 44.12 |
| KRH08461 | Soybean | cytosol | 41.87 | 43.17 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 37.65 | 42.81 |
| KRH70119 | Soybean | cytosol | 40.96 | 42.77 |
| KRH70169 | Soybean | cytosol | 17.47 | 39.46 |
| KRH28699 | Soybean | cytosol | 33.43 | 37.12 |
| KRH76768 | Soybean | cytosol | 33.43 | 37.12 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 15.66 | 33.55 |
| KRH43180 | Soybean | cytosol | 22.59 | 29.18 |
| KRH59335 | Soybean | cytosol | 13.25 | 28.95 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:100789318 | MapMan:22.7.1.1 | EMBL:ACUP02006187 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_10G082400 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 |
| UniProt:I1L9L2 | InterPro:IPR000727 | EnsemblPlants:KRH32861 | ProteinID:KRH32861 | ProteinID:KRH32861.1 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000233D26B | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:10015172..10018232
Molecular Weight (calculated)
37030.7 Da
IEP (calculated)
7.306
GRAVY (calculated)
-0.635
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSGSFS RFRSDQSSPD RHHDIEMGAA AGGPRGGEVN LDKFFEDVEG VNEELKELEG LAQSLRSSHE QSKTLHNAKA VRDLRSGMDG DVSAALKKAK
101: LIKLKLEALE RSNAANRNLP GCGPGSSSDR TRTSVVNGLK KKLKDSMESF NEIRGLVSSE YRETVQRRYF TVTGENPDDK TLDLLISTGE SETFLQKAIQ
201: EQGRGRILDT INEIQERHDA VKEIEKNLKE LHQVFLDMTV LVQHQGEQLD DIESHVARAH SFVRTGAEQL QTARKYQKNT RKWTCYCIIL LLVIIFFVVL
301: FTVRPWKNNS SGGGNNGNQP APAQTPPPPV NA
101: LIKLKLEALE RSNAANRNLP GCGPGSSSDR TRTSVVNGLK KKLKDSMESF NEIRGLVSSE YRETVQRRYF TVTGENPDDK TLDLLISTGE SETFLQKAIQ
201: EQGRGRILDT INEIQERHDA VKEIEKNLKE LHQVFLDMTV LVQHQGEQLD DIESHVARAH SFVRTGAEQL QTARKYQKNT RKWTCYCIIL LLVIIFFVVL
301: FTVRPWKNNS SGGGNNGNQP APAQTPPPPV NA
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.