CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46413	Soybean	nucleus	93.71	94.63
VIT_19s0015g00830.t01	Wine grape	nucleus	41.45	71.39
VIT_19s0015g00840.t01	Wine grape	nucleus	29.35	70.82
KRH75188	Soybean	cytosol	33.23	65.81
PGSC0003DMT400057532	Potato	nucleus	66.29	64.52
Bra026418.1-P	Field mustard	plastid	62.42	60.37
Bra035594.1-P	Field mustard	nucleus	61.29	59.38
GSMUA_Achr7P20140_001	Banana	nucleus	57.26	59.27
Solyc07g052110.2.1	Tomato	nucleus	67.42	59.21
CDX91690	Canola	cytosol, plastid	19.35	58.54
CDY62126	Canola	cytosol	21.29	57.64
Bra002867.1-P	Field mustard	mitochondrion, nucleus	60.32	56.75
AT5G55920.1	Thale cress	nucleus	61.77	56.16
CDY65896	Canola	nucleus	20.65	56.14
AT4G26600.5	Thale cress	plastid	62.42	55.13
CDY17518	Canola	cytosol	18.23	55.12
Os02t0724600-01	Rice	nucleus	58.39	52.24
Os09t0551300-02	Rice	nucleus	58.55	51.93
KXG30856	Sorghum	nucleus, plastid	57.26	51.3
CDY06532	Canola	cytosol	30.65	50.8
Zm00001d017887_P004	Maize	plastid	58.55	49.45
Zm00001d051652_P003	Maize	plasma membrane	56.94	49.16
TraesCS6D01G267300.1	Wheat	plastid	58.39	47.2
HORVU6Hr1G072030.1	Barley	plastid	57.42	47.09
TraesCS6B01G315600.1	Wheat	plastid	57.74	46.86
TraesCS6A01G286600.1	Wheat	nucleus	58.39	46.83
KRH14216	Soybean	cytosol	11.94	25.52
KRH73916	Soybean	plastid	19.19	22.28
KRH61558	Soybean	nucleus	17.1	21.46
KRH52232	Soybean	nucleus	16.61	20.98
KRH59299	Soybean	cytosol	10.0	19.5
KRH31314	Soybean	cytosol	18.06	13.73
KRH43150	Soybean	nucleus	17.74	13.41
KRG97553	Soybean	extracellular, plasma membrane	5.97	9.0
KRH59300	Soybean	mitochondrion	5.65	7.22
KRH45277	Soybean	cytosol	0.32	1.82

Protein Annotations

EntrezGene:100807160	MapMan:17.1.2.2.3.6	Gene3D:3.30.70.3130	Gene3D:3.40.50.150	EMBL:ACUP02010889	ncoils:Coil
InterPro:Fmu/NOL1/Nop2p_CS	EnsemblPlantsGene:GLYMA_18G075000	GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008757	GO:GO:0009383	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0070475
UniProt:I1N087	InterPro:IPR001678	EnsemblPlants:KRG98455	ProteinID:KRG98455	ProteinID:KRG98455.1	InterPro:MeTrfase_RsmB/NOP2
InterPro:Methyltr_RsmF_N	InterPro:Nop2p	PFAM:PF01189	PFAM:PF17125	PRINTS:PR02008	PRINTS:PR02012
ScanProsite:PS01153	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF30	MetaCyc:PWY-6825	InterPro:RCMT
InterPro:RCMT_NOP2	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	TIGRFAMs:TIGR00446	UniParc:UPI000294FE03	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:7106464..7112929

Molecular Weight (calculated)

69299.0 Da

IEP (calculated)

6.443

GRAVY (calculated)

-0.805

Length

620 amino acids

Sequence
(BLAST)

001: MAPARKKPSK PSKSPKNPKK IQPKHDSSSE SEEDTPPQQL QPEQLELGDN SDSASELSSV GDDPLADDFL QGSDDDEEKA SGSESGLESG LESGSDSDSD
101: DDDIEKKSRA IDEEKAREEE DADAEMQLNI NQESDEFRLP TKEELEDEAL RPPDLSNLQR RIKEIVRVLS NFKALRQDGS TRKEYVEQLK KDLCTYYGYN
201: EFLIGALVEM FPVVELMELI EAFEKPRPMC LRTNTLKTRR RDLADVLINR GVNLDPLSKW SKVGLVVYDS QVPIGATPEY MAGFYMLQSA SSFLPVMALA
301: PQEKERVIDM AAAPGGKTTY IAALMKNTGI IFANEMKVPR LKSLTGNLHR MGVSNTVVCN YDGKELPKVL GVNVVDRVLL DAPCSGTGVI SKDESVKTSK
401: SLEDIQKCAH LQKELILAAI DMVDANSKSG GYIVYSTCSI MVAENEAVID YALKKRDVKL VPCGLDFGRP GFTRFREQRF HPSLEKTRRF YPHVQNMDGF
501: FVAKLKKMSS SKPGAKSSET AEKEEDTTTF VEEKEKSSYG IKENGNVSSE SESKNGKKRK FPSKPSNGLK EKGKESSESE PKKRNKRLFP SKEEISKARE
601: EKRNALREKN RKGSKRQKKK

Best Arabidopsis Sequence Match ( AT4G26600.1 )
(BLAST)

001: MAALTRNKKK GSNSQTPPLN KQTKASPLKK AAKTQKPPLK KQRKCISEKK PLKKPEVSTD EEEEEEENEQ SDEGSESGSD LFSDGDEEGN NDSDDDDDDD
101: DDDDDDDEDA EPLAEDFLDG SDNEEVTMGS DLDSDSGGSK LERKSRAIDR KRKKEVQDAD DEFKMNIKEK PDEFQLPTQK ELEEEARRPP DLPSLQMRIR
201: EIVRILSNFK DLKPKGDKHE RNDYVGQLKA DLSSYYGYNE FLIGTLIEMF PVVELMELIE AFEKKRPTSI RTNTLKTRRR DLADILLNRG VNLDPLSKWS
301: KVGLIVYDSQ VPIGATPEYL AGFYMLQSAS SFLPVMALAP REKERVVDMA AAPGGKTTYV AALMKNTGII YANEMKVPRL KSLSANLHRM GVTNTIVCNY
401: DGRELTKVLG QSSVDRVLLD APCSGTGVIS KDESVKTSKS ADDIKKFAHL QKQLILGAID LVDANSKTGG YIVYSTCSVM IPENEAVIDY ALKNRDVKLV
501: PCGLDFGRPG FSSFREHRFH PSLEKTRRFY PHVHNMDGFF VAKLKKMSNA MQPSGNDEPA VTMEQAQVSS SDDDDEKAEA IEELEKPPVA SGQPKRESNT
601: KEDTNKRKNP RSKEIHKGKR NKNTKTESGN VEEPRKQKKK RSQWKNEIAQ AREEKRKTMR ENAKETPKHR G

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:TAIR;Acc:AT4G26600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.