Factsheet for Solyc07g052110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057532	Potato	nucleus	80.03	88.7
KRH46413	Soybean	nucleus	58.92	67.75
KRG98455	Soybean	nucleus	59.21	67.42
VIT_19s0015g00830.t01	Wine grape	nucleus	34.14	66.94
VIT_19s0015g00840.t01	Wine grape	nucleus	23.8	65.37
Bra026418.1-P	Field mustard	plastid	55.1	60.69
CDX91690	Canola	cytosol, plastid	17.28	59.51
Bra035594.1-P	Field mustard	nucleus	52.27	57.66
CDY62126	Canola	cytosol	18.56	57.21
KRH75188	Soybean	cytosol	25.35	57.19
GSMUA_Achr7P20140_001	Banana	nucleus	47.88	56.43
CDY65896	Canola	nucleus	18.13	56.14
Bra002867.1-P	Field mustard	mitochondrion, nucleus	52.27	55.99
AT5G55920.1	Thale cress	nucleus	53.82	55.72
CDY17518	Canola	cytosol	16.01	55.12
AT4G26600.5	Thale cress	plastid	54.53	54.84
Os02t0724600-01	Rice	nucleus	50.99	51.95
Os09t0551300-02	Rice	nucleus	50.99	51.5
CDY06532	Canola	cytosol	26.77	50.53
KXG30856	Sorghum	nucleus, plastid	49.15	50.14
Zm00001d051652_P003	Maize	plasma membrane	49.29	48.47
Zm00001d017887_P004	Maize	plastid	50.0	48.09
HORVU6Hr1G072030.1	Barley	plastid	50.0	46.69
TraesCS6D01G267300.1	Wheat	plastid	50.71	46.68
TraesCS6B01G315600.1	Wheat	plastid	50.42	46.6
TraesCS6A01G286600.1	Wheat	nucleus	50.71	46.31
Solyc12g015710.1.1	Tomato	cytosol	17.42	21.81
Solyc08g062560.2.1	Tomato	nucleus	12.75	19.57
Solyc08g062440.1.1	Tomato	endoplasmic reticulum	5.24	17.21
Solyc11g010110.1.1	Tomato	nucleus	15.72	12.64
Solyc05g051520.2.1	Tomato	nucleus	14.59	12.52

Protein Annotations

MapMan:17.1.2.2.3.6	Gene3D:3.30.70.3130	Gene3D:3.40.50.150	ncoils:Coil	GO:GO:0000470	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009383	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	GO:GO:0070475	InterPro:IPR001678	UniProt:K4CFB0	InterPro:MeTrfase_RsmB/NOP2	InterPro:Methyltr_RsmF_N
InterPro:Nop2p	PFAM:PF01189	PFAM:PF17125	PRINTS:PR02008	PRINTS:PR02012	PFscan:PS51686
PANTHER:PTHR22807	PANTHER:PTHR22807:SF30	InterPro:RCMT	InterPro:RCMT_NOP2	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
EnsemblPlantsGene:Solyc07g052110.2	EnsemblPlants:Solyc07g052110.2.1	TIGRFAMs:TIGR00446	TMHMM:TMhelix	UniParc:UPI000276B645	SEG:seg

Description

No Description!

Coordinates

chr7:+:60655311..60664510

Molecular Weight (calculated)

78457.7 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.727

Length

706 amino acids

Sequence
(BLAST)

001: MDSIYKISAT LVLNISLFTA SLLSSLSAPL SAPLILADKR RRRRVNKLLT ISPTATALSP MAGKLGKKVG SKLGKPPTKK KQKKEPLPPK PLEKEDLFSD
101: SEGTDGDFEE DGGSGDEEQQ EMNSDSDMSS DLDDPFAADI LASGDADDCS DVHSDSDVDS DSDADDTDLV RKSKAIDDER KREEEEGDLE LQLNIKEEAD
201: EFRLPTTEEL EEETNRPPDL SNLQRRIKEI VRVLSNFKSL RQENVTRKDY VDQLKRDLGS YYGYNDFLIE SLVELFPPVE LIELIEAFEK PRPISLRTNT
301: LKTRRRDLAG VLLNRGVNLD PLSKWSKVGL VVYDSQVPVG ATPEYMAGHY MLQSASSFLP VMALAPQENE RIVDMAAAPG GKTTYVAALM KNSGIIYANE
401: MKESRLKSLT ANLHRMGVTN TIVCNYDGRE LPKVLGQNTA DRILLDAPCS GTGVISKDES VKTSKTAADI QNCSHLQKEL ILAAIDMVDA NSKSGGYIVY
501: STCSIMVDEN EAVIDYALKK RDVKLVPCGL DFGRPGFVRF RQHRFHTSLD KTRRFYPHVH NMDGFFVAKL KKMSNSKSAA KASAQSEEIE DADTIESSDQ
601: QNAEEDDDKH SEQEGIAKES GKLNEKAVAD KKRKRDFQKH SDKKGVGQNG GGTKNGRAEN KPVAPKRREK KKPPPIEEIA KAREEKRNAL REEKRKATLK
701: KKSGNK

Best Arabidopsis Sequence Match ( AT4G26600.1 )
(BLAST)

001: MAALTRNKKK GSNSQTPPLN KQTKASPLKK AAKTQKPPLK KQRKCISEKK PLKKPEVSTD EEEEEEENEQ SDEGSESGSD LFSDGDEEGN NDSDDDDDDD
101: DDDDDDDEDA EPLAEDFLDG SDNEEVTMGS DLDSDSGGSK LERKSRAIDR KRKKEVQDAD DEFKMNIKEK PDEFQLPTQK ELEEEARRPP DLPSLQMRIR
201: EIVRILSNFK DLKPKGDKHE RNDYVGQLKA DLSSYYGYNE FLIGTLIEMF PVVELMELIE AFEKKRPTSI RTNTLKTRRR DLADILLNRG VNLDPLSKWS
301: KVGLIVYDSQ VPIGATPEYL AGFYMLQSAS SFLPVMALAP REKERVVDMA AAPGGKTTYV AALMKNTGII YANEMKVPRL KSLSANLHRM GVTNTIVCNY
401: DGRELTKVLG QSSVDRVLLD APCSGTGVIS KDESVKTSKS ADDIKKFAHL QKQLILGAID LVDANSKTGG YIVYSTCSVM IPENEAVIDY ALKNRDVKLV
501: PCGLDFGRPG FSSFREHRFH PSLEKTRRFY PHVHNMDGFF VAKLKKMSNA MQPSGNDEPA VTMEQAQVSS SDDDDEKAEA IEELEKPPVA SGQPKRESNT
601: KEDTNKRKNP RSKEIHKGKR NKNTKTESGN VEEPRKQKKK RSQWKNEIAQ AREEKRKTMR ENAKETPKHR G

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:TAIR;Acc:AT4G26600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.