Factsheet for Solyc08g062560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021199	Potato	cytosol, plastid	95.22	91.06
Solyc08g062440.1.1	Tomato	endoplasmic reticulum	30.87	66.05
VIT_04s0008g01480.t01	Wine grape	plastid	67.61	61.22
CDY24989	Canola	plastid	63.26	59.51
Bra020544.1-P	Field mustard	mitochondrion, plastid	63.04	59.3
CDY05536	Canola	plastid	63.04	59.3
CDX87063	Canola	plastid	62.17	59.09
CDY19785	Canola	plastid	62.17	59.09
Bra036564.1-P	Field mustard	mitochondrion	61.96	58.88
KRH61558	Soybean	nucleus	61.96	57.69
KRH52232	Soybean	nucleus	61.52	57.64
GSMUA_Achr5P24950_001	Banana	mitochondrion	60.65	54.39
Zm00001d016374_P002	Maize	cytosol, plastid	58.7	54.22
KXG29808	Sorghum	plastid	58.48	54.12
Os02t0217800-00	Rice	plastid	59.35	54.06
TraesCS6D01G171500.1	Wheat	plastid	59.13	53.75
TraesCS6A01G183400.2	Wheat	plastid	58.26	52.96
TraesCS6B01G213900.2	Wheat	plastid	58.26	52.96
AT5G26180.3	Thale cress	plastid	61.96	50.26
HORVU6Hr1G038870.11	Barley	cytosol	56.74	49.71
Solyc12g015710.1.1	Tomato	cytosol	16.52	13.48
Solyc07g052110.2.1	Tomato	nucleus	19.57	12.75
Solyc05g051520.2.1	Tomato	nucleus	15.87	8.87
Solyc11g010110.1.1	Tomato	nucleus	15.22	7.97

Protein Annotations

Gene3D:3.30.70.1170	Gene3D:3.40.50.150	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0008757	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0070475	InterPro:IPR001678
UniProt:K4CL44	InterPro:MeTrfase_RsmB/NOP2	PFAM:PF01189	PRINTS:PR02008	PFscan:PS51686	PANTHER:PTHR22807
PANTHER:PTHR22807:SF4	InterPro:RCMT	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc08g062560.2	EnsemblPlants:Solyc08g062560.2.1
UniParc:UPI000276B2A8	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:51388569..51398936

Molecular Weight (calculated)

51697.2 Da

IEP (calculated)

10.136

GRAVY (calculated)

-0.128

Length

460 amino acids

Sequence
(BLAST)

001: MSSAERSALF ARREAAKVLR TILQGDARRR AVGTIKSLVY SPSVRNKRAT YALVCQTLKY LPVIKDVFHT TNVLSSKWKR QEELMYIILY DILFSQEVLL
101: AGDAEKFLLQ KKDVLQAALA KLLVRKKVKH FSDLMTSYKI SDLPKPRYAR VNTLKMDVES ALVEFKKQYE VCQDAMVPDL LILPPRTDLH DHPLVKSGSV
201: FLQGKASSMV AVALGPKPRW EVIDACAAPG NKTVHLAALM KGNGKIIACE LNKERVKRLK DTIELAGATN VEIKHEDFLN ISPEDPAYSK VQAILLDPSC
301: SGSGTVVDRL DHLLPSYTTD SDVNRLEKLA AFQRKALEHA LSFPAVERIV YSTCSVNQVE NEDVIKSVLP LASSYGFELT TIFPQWARRG HPIFDGSQRV
401: LRTDLIEDQE GFFIALFVRK GVSPPAKHIR DVGNTLRALQ RRKRRKINSF FLLKTLGLLL

Best Arabidopsis Sequence Match ( AT5G26180.5 )
(BLAST)

001: MVARRNKPKA PLVKHRFSGG DSHKPKPPPA TKQPFSGVES HKPKTSPATK QKFSGVESHK PKTPPGKQRF SGAESRKPKT PPATKQKFSS LERSALYARR
101: EAANILRTVL RGDAERRAVA SIKSLVLSPS VRNKRGTFAL VCETLKYLTV IKDVLDIANV LNSKWKRQEP LVFIVCYDIL FGKDTPSIGD AEKFLMRHKE
201: ALLSGLATLL VRKKVDSVDQ LLGSKLTGHL KPRYVRVNTL KMDVDSAVQE LEKHYTVQKD ETVPDLLVLP PGSDLHAHRL VANGRIFLQG KASSMVAAAL
301: QPQAGWEVLD ACSAPGNKTI HLAALMEGQG KIIACELNEE RVKRLEHTIK LSGASNIEVC HGDFLGLNPK DPSFAKIRAI LLDPSCSGSG TITDRLDHLL
401: PSHSEDNNMN YDSMRLHKLA VFQKKALAHA LSFPKVERVV YSTCSIYQIE NEDVVSSVLP LASSLGFKLA TPFPQWQRRG LPVFAGSEHL LRMDPVEDKE
501: GFFIALFVRA NKLDNPKSSE LPDRVCRRRP KERTMQLHPY LCPKMFRAWS GTLHRLKTRF LLSRNGC

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.