Factsheet for VIT_04s0008g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062560.2.1	Tomato	nucleus	61.22	67.61
PGSC0003DMT400021199	Potato	cytosol, plastid	63.78	67.36
KRH52232	Soybean	nucleus	63.19	65.38
CDY05536	Canola	plastid	62.6	65.03
Bra020544.1-P	Field mustard	mitochondrion, plastid	62.4	64.83
CDY24989	Canola	plastid	62.2	64.62
KRH61558	Soybean	nucleus	62.8	64.57
CDX87063	Canola	plastid	60.43	63.43
CDY19785	Canola	plastid	60.04	63.02
Bra036564.1-P	Field mustard	mitochondrion	59.65	62.6
GSMUA_Achr5P24950_001	Banana	mitochondrion	59.84	59.26
KXG29808	Sorghum	plastid	57.87	59.15
Zm00001d016374_P002	Maize	cytosol, plastid	57.48	58.63
Os02t0217800-00	Rice	plastid	57.28	57.62
TraesCS6A01G183400.2	Wheat	plastid	56.5	56.72
TraesCS6B01G213900.2	Wheat	plastid	56.3	56.52
TraesCS6D01G171500.1	Wheat	plastid	56.1	56.32
AT5G26180.3	Thale cress	plastid	61.02	54.67
HORVU6Hr1G038870.11	Barley	cytosol	54.72	52.95
Solyc08g062440.1.1	Tomato	endoplasmic reticulum	21.65	51.16
VIT_19s0015g00840.t01	Wine grape	nucleus	8.66	17.12
VIT_19s0015g00650.t01	Wine grape	plastid	14.57	14.1
VIT_19s0015g00830.t01	Wine grape	nucleus	8.27	11.67
VIT_07s0191g00040.t01	Wine grape	nucleus	14.76	8.96

Protein Annotations

EntrezGene:100261190	wikigene:100261190	Gene3D:3.30.70.1170	Gene3D:3.40.50.150	MapMan:35.2	ProteinID:CCB46582
ProteinID:CCB46582.1	UniProt:F6H3P9	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173
GO:GO:0008757	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0070475	InterPro:IPR001678
EntrezGene:LOC100261190	wikigene:LOC100261190	InterPro:MeTrfase_RsmB/NOP2	PFAM:PF01189	PRINTS:PR02008	PFscan:PS51686
PANTHER:PTHR22807	PANTHER:PTHR22807:SF4	InterPro:RCMT	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI00015C8C7F
ArrayExpress:VIT_04s0008g01480	EnsemblPlantsGene:VIT_04s0008g01480	EnsemblPlants:VIT_04s0008g01480.t01	RefSeq:XP_002279425	RefSeq:XP_002279425.2	SEG:seg

Description

No Description!

Coordinates

chr4:+:1213604..1219941

Molecular Weight (calculated)

56393.8 Da

IEP (calculated)

10.402

GRAVY (calculated)

-0.221

Length

508 amino acids

Sequence
(BLAST)

001: MVSSKTAATT ASRAKKPKEQ RLSKADRSSY FARREAAKVL QCVLQGDAKR RAVGSIKSLV YSPSVRNKKA TFALVCQTLK HLSIIKDVLD SARILNAKWK
101: RQEGLMYIIT YDILFGQEIS SVGDAEKFLL LQKDAIQLAL ARLLVRKKVK RVEDLMALYQ IPDVSKPRFV RVNTLKLDVE SAFHELGKQN MVQKDDMVPD
201: LLILPPGSDL HNHPLVRNGS VFMQGKASSM VAVALGPEPG WEVLDACSAP GNKTVHLAAL MNGKGKIIAC ELDNERVKRL EDTVRLSGAA NIEVLHGDFL
301: NLNPMDPSYS KVRAILLDPS CSGSGTTAER LDHLLPSYAA GDATDVAGTE RLNKLAAFQK KALEHALSFP AVEKVVYSTC SIHQIENEDV IKSVLPLAAS
401: HGFQLATPFP QWPRRGLPVF EGSEHLLRTH PVEDKEGFFI ALFVRKSIAR SLEQPIKTRK NNKVKSAKRN ATMNHNKSVM PFPFTRLSKL LLHSHLRLQT
501: YKKLNLST

Best Arabidopsis Sequence Match ( AT5G26180.5 )
(BLAST)

001: MVARRNKPKA PLVKHRFSGG DSHKPKPPPA TKQPFSGVES HKPKTSPATK QKFSGVESHK PKTPPGKQRF SGAESRKPKT PPATKQKFSS LERSALYARR
101: EAANILRTVL RGDAERRAVA SIKSLVLSPS VRNKRGTFAL VCETLKYLTV IKDVLDIANV LNSKWKRQEP LVFIVCYDIL FGKDTPSIGD AEKFLMRHKE
201: ALLSGLATLL VRKKVDSVDQ LLGSKLTGHL KPRYVRVNTL KMDVDSAVQE LEKHYTVQKD ETVPDLLVLP PGSDLHAHRL VANGRIFLQG KASSMVAAAL
301: QPQAGWEVLD ACSAPGNKTI HLAALMEGQG KIIACELNEE RVKRLEHTIK LSGASNIEVC HGDFLGLNPK DPSFAKIRAI LLDPSCSGSG TITDRLDHLL
401: PSHSEDNNMN YDSMRLHKLA VFQKKALAHA LSFPKVERVV YSTCSIYQIE NEDVVSSVLP LASSLGFKLA TPFPQWQRRG LPVFAGSEHL LRMDPVEDKE
501: GFFIALFVRA NKLDNPKSSE LPDRVCRRRP KERTMQLHPY LCPKMFRAWS GTLHRLKTRF LLSRNGC

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.