CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52232	Soybean	nucleus	94.33	94.91
VIT_04s0008g01480.t01	Wine grape	plastid	64.57	62.8
Solyc08g062560.2.1	Tomato	nucleus	57.69	61.96
PGSC0003DMT400021199	Potato	cytosol, plastid	58.7	60.29
Bra020544.1-P	Field mustard	mitochondrion, plastid	59.11	59.71
CDY05536	Canola	plastid	58.91	59.51
CDY24989	Canola	plastid	58.7	59.3
CDX87063	Canola	plastid	58.1	59.3
CDY19785	Canola	plastid	57.69	58.88
Bra036564.1-P	Field mustard	mitochondrion	57.49	58.68
GSMUA_Achr5P24950_001	Banana	mitochondrion	56.07	54.0
KXG29808	Sorghum	plastid	52.02	51.71
Os02t0217800-00	Rice	plastid	52.83	51.68
Zm00001d016374_P002	Maize	cytosol, plastid	51.82	51.41
AT5G26180.3	Thale cress	plastid	58.1	50.62
TraesCS6A01G183400.2	Wheat	plastid	51.21	50.0
TraesCS6D01G171500.1	Wheat	plastid	51.01	49.8
TraesCS6B01G213900.2	Wheat	plastid	51.01	49.8
HORVU6Hr1G038870.11	Barley	cytosol	49.8	46.86
Solyc08g062440.1.1	Tomato	endoplasmic reticulum	20.24	46.51
KRH14216	Soybean	cytosol	11.13	18.97
KRH46413	Soybean	nucleus	21.26	17.1
KRG98455	Soybean	nucleus	21.46	17.1
KRH59299	Soybean	cytosol	10.73	16.67
KRH73916	Soybean	plastid	15.99	14.79
KRH75188	Soybean	cytosol	8.91	14.06
KRH31314	Soybean	cytosol	17.41	10.54
KRH43150	Soybean	nucleus	17.0	10.24
KRG97553	Soybean	extracellular, plasma membrane	5.06	6.08
KRH59300	Soybean	mitochondrion	4.05	4.12
KRH45277	Soybean	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100775620	Gene3D:3.30.70.1170	Gene3D:3.40.50.150	MapMan:35.2	EMBL:ACUP02002171	EnsemblPlantsGene:GLYMA_04G054300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0008757	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	GO:GO:0070475	UniProt:I1JTZ9	InterPro:IPR001678	EnsemblPlants:KRH61558	ProteinID:KRH61558
ProteinID:KRH61558.1	InterPro:MeTrfase_RsmB/NOP2	PFAM:PF01189	PRINTS:PR02008	PFscan:PS51686	PANTHER:PTHR22807
PANTHER:PTHR22807:SF4	MetaCyc:PWY-6825	InterPro:RCMT	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI000233A950
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:4409424..4414833

Molecular Weight (calculated)

55123.3 Da

IEP (calculated)

10.467

GRAVY (calculated)

-0.307

Length

494 amino acids

Sequence
(BLAST)

001: MKKTKKSGEE NGGKLKFKGA ERSAYFARRE AAKVLKVILE GDAKRRALAS IKSLIYQPSV RNKKATFALI CQTLKHLPII KDVLEAASIL NTKWKRQREL
101: IYIIVYDILL GQAVSLVGDA EKYLMRHQDA LRSTLKQLLL QRNVKTVKQL IALHQVPDIS VPRYVRVNTL KLDVDSALLE LQKKYSVQKD NLLPDLLILP
201: PGTDLHDHPL VKNGSIFLQG KASSMAAPAL SPEPGWEVLD ACAAPGNKTV HLAALMKRKG KIIACELQKE RIKRLKDTIK LSGASNIQVL NDDFLNLNPK
301: DPSYSKVKAI LLDPSCSGSG TAASRLDHLL PSKAAGQDAD MERLNKLATF QRKALQHALL FPAVERIVYS TCSINQIENE DVIKSVLPIA ESNGFQLAKP
401: FPGWECRGLP VFEGSECLVR TDPAKHGEGF FIALFTRKDA NFSGRSNKNE TRISDSTAEI KNARRKKKRV PFVSTNPFKT WLYDSKIVKS WRSN

Best Arabidopsis Sequence Match ( AT5G26180.5 )
(BLAST)

001: MVARRNKPKA PLVKHRFSGG DSHKPKPPPA TKQPFSGVES HKPKTSPATK QKFSGVESHK PKTPPGKQRF SGAESRKPKT PPATKQKFSS LERSALYARR
101: EAANILRTVL RGDAERRAVA SIKSLVLSPS VRNKRGTFAL VCETLKYLTV IKDVLDIANV LNSKWKRQEP LVFIVCYDIL FGKDTPSIGD AEKFLMRHKE
201: ALLSGLATLL VRKKVDSVDQ LLGSKLTGHL KPRYVRVNTL KMDVDSAVQE LEKHYTVQKD ETVPDLLVLP PGSDLHAHRL VANGRIFLQG KASSMVAAAL
301: QPQAGWEVLD ACSAPGNKTI HLAALMEGQG KIIACELNEE RVKRLEHTIK LSGASNIEVC HGDFLGLNPK DPSFAKIRAI LLDPSCSGSG TITDRLDHLL
401: PSHSEDNNMN YDSMRLHKLA VFQKKALAHA LSFPKVERVV YSTCSIYQIE NEDVVSSVLP LASSLGFKLA TPFPQWQRRG LPVFAGSEHL LRMDPVEDKE
501: GFFIALFVRA NKLDNPKSSE LPDRVCRRRP KERTMQLHPY LCPKMFRAWS GTLHRLKTRF LLSRNGC

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.