CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00650.t01	Wine grape	plastid	75.84	77.14
CDY24205	Canola	plastid	70.41	72.31
AT3G13180.1	Thale cress	plastid	70.79	72.28
Bra039376.1-P	Field mustard	plastid	70.6	72.08
CDY43364	Canola	plastid	70.6	72.08
CDY28964	Canola	cytosol	17.42	69.4
PGSC0003DMT400076617	Potato	cytosol, plastid	71.16	68.97
CDX85924	Canola	cytosol	16.67	68.46
Solyc12g015710.1.1	Tomato	cytosol	71.35	67.55
KRH14216	Soybean	cytosol	35.77	65.86
GSMUA_Achr3P10750_001	Banana	plastid	65.73	62.01
Bra022117.1-P	Field mustard	cytosol	21.35	60.64
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	62.36	60.44
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	61.8	59.89
TraesCS5D01G260700.1	Wheat	mitochondrion	63.11	59.23
Os09t0477900-01	Rice	mitochondrion, plastid	63.11	59.12
HORVU5Hr1G071070.1	Barley	plastid	62.73	58.16
OQU89660	Sorghum	plastid	61.24	56.97
CDY66223	Canola	mitochondrion	25.47	53.33
KRG98455	Soybean	nucleus	22.28	19.19
KRH46413	Soybean	nucleus	21.72	18.89
KRH59299	Soybean	cytosol	9.74	16.35
KRH61558	Soybean	nucleus	14.79	15.99
KRH52232	Soybean	nucleus	14.42	15.68
KRH75188	Soybean	cytosol	8.99	15.34
KRH31314	Soybean	cytosol	14.04	9.19
KRH43150	Soybean	nucleus	13.86	9.02
KRG97553	Soybean	extracellular, plasma membrane	3.18	4.14
KRH59300	Soybean	mitochondrion	2.25	2.47
KRH45277	Soybean	cytosol	0.19	0.91

Protein Annotations

Gene3D:1.10.940.10	EntrezGene:100779327	Gene3D:3.40.50.150	MapMan:35.2	EMBL:ACUP02001290	EnsemblPlantsGene:GLYMA_02G301000
GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0008649	GO:GO:0008757	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0031167	GO:GO:0032259	UniProt:I1JJK1	InterPro:IPR001678	InterPro:IPR035926	EnsemblPlants:KRH73916
ProteinID:KRH73916	ProteinID:KRH73916.1	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	PFAM:PF01029
PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53
MetaCyc:PWY-6825	InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	SUPFAM:SSF48013	SUPFAM:SSF53335
TIGRFAMs:TIGR00563	UniParc:UPI000295A2B9	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:47703890..47711294

Molecular Weight (calculated)

58985.4 Da

IEP (calculated)

9.257

GRAVY (calculated)

-0.218

Length

534 amino acids

Sequence
(BLAST)

001: MARVLYMGLP FPAEPQKTAP SSSSSSSPSK PLKLPHRTCS TNISIPSTAK GGGNRLLKTQ KLNSEVSPHR AVSAVRLMRI ELGGAFADLL NEKGKGSGEN
101: EMGYVQRTLG FRTRELNHHD LRLVTDIVGG TIRWRRYLDH LISSLCHDKD ISSMEPLLLQ ILRIGFYEIV KLDMPPYAVV DENVKLAKFA LRPGAGNMVN
201: GILRKLVVLK EKESLPLPKV EGDDRAQARA LATLYSHPVW MVRRWTKYLG QEEAIKLMIW NNSEPSFSLR ANRARGFSRD DLVTQLNALK VPHKLSPHLD
301: EFVRIKTGLQ IIIQAGLLKK GLCSVQDESA GLVVSVVDPQ PGETIIDCCA APGGKTLYMA SHLSGQGKVF AIDVNSGRLR ILKETAKLHQ VDGVITAIHA
401: DLRTLPDSGQ LKSNKVLLDA PCSGLGVLSK RADLRWNKNL EDMEQLKELQ DELLDAASKL VKPGGVLVYS TCSIDPEEND DRVVAFLARH SDFHIDPVDR
501: YVPPDFETSS GFFFSNPVKH SLDGSFAARL VRDL

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.