Factsheet for TraesCS5B01G251800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	98.55	98.55
TraesCS5D01G260700.1	Wheat	mitochondrion	97.46	94.38
HORVU5Hr1G071070.1	Barley	plastid	93.1	89.06
Os09t0477900-01	Rice	mitochondrion, plastid	82.4	79.65
OQU89660	Sorghum	plastid	81.31	78.05
VIT_19s0015g00650.t01	Wine grape	plastid	62.43	65.52
AT3G13180.1	Thale cress	plastid	61.52	64.82
CDY24205	Canola	plastid	60.8	64.42
Bra039376.1-P	Field mustard	plastid	60.98	64.24
CDY43364	Canola	plastid	60.98	64.24
KRH73916	Soybean	plastid	59.89	61.8
PGSC0003DMT400076617	Potato	cytosol, plastid	61.34	61.34
CDY28964	Canola	cytosol	14.88	61.19
CDX85924	Canola	cytosol	14.34	60.77
Solyc12g015710.1.1	Tomato	cytosol	61.89	60.46
GSMUA_Achr3P10750_001	Banana	plastid	62.07	60.42
Bra022117.1-P	Field mustard	cytosol	18.33	53.72
CDY66223	Canola	mitochondrion	22.69	49.02
KRH14216	Soybean	cytosol	25.05	47.59
TraesCS6B01G213900.2	Wheat	plastid	14.34	15.61
TraesCS6B01G315600.1	Wheat	plastid	18.87	13.61
TraesCS4B01G060400.1	Wheat	mitochondrion, plastid	14.34	9.48
TraesCS5B01G247600.1	Wheat	cytosol, mitochondrion	13.25	8.36

Protein Annotations

Gene3D:1.10.940.10	Gene3D:3.40.50.150	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008649	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR001678	InterPro:IPR035926	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	PFAM:PF01029
PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53
InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	SUPFAM:SSF48013	SUPFAM:SSF53335	TIGRFAMs:TIGR00563
EnsemblPlantsGene:TraesCS5B01G251800	EnsemblPlants:TraesCS5B01G251800.1	TIGR:cd02440	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg	:

Description

No Description!

Coordinates

chr5B:+:434408906..434415010

Molecular Weight (calculated)

61084.7 Da

IEP (calculated)

7.805

GRAVY (calculated)

-0.169

Length

551 amino acids

Sequence
(BLAST)

001: MEAKALPLTH FRARAGSPLL LSADASSAAR KGSGAPGRSM ASRYDAGAPP SRAGMNGVPK LNPKFSTKRA GTSKVPIINF EVSHHRAVAA VRLLRADKGK
101: AFVDLLNEKA NDSGENEMGY VERTLGFSTR HLDDRDIRLV TVIVAGTVRW KRYIDYLIMS LCSEEKVFSN MEPLLLQILR IGFFEILKLN VPAYAVVDEN
201: VRLAKVALRP GAGNMVNAIL RKLLLLKETD SLPLPKIEGD DRAQARALSI IYSHPVWMVR RWIRFLGKDE ALKLMNWNNS DPYFSLRVNT TNGYTRDDLV
301: NRLEDLQVHY EKSIMDEFVR IREGMQAVLQ AGLLKEGMCA VQDESAGFVV SVVDPQPGET IMDCCAAPGG KTFFMASRLA GQGKVSALDI NKGRLRILME
401: AAKCHNLDDI ITDIHGDLRL YAKESTATYD KVLLDAPCSG LGVLSKRADL RWNRQFEDLE ELVCLQDELL DSASLLVKPG GILIYSTCSI DHEENENRVT
501: AFVQRHPEFT PQGVQGFVPA EFITDDGFYS SSPTKHSLDG AFAARLVRSM H

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.