Factsheet for Bra022117.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28964	Canola	cytosol	43.62	61.19
CDX85924	Canola	cytosol	42.02	60.77
CDY66223	Canola	mitochondrion	60.64	44.71
KRH14216	Soybean	cytosol	48.94	31.72
Bra039376.1-P	Field mustard	plastid	74.47	26.77
AT3G13180.1	Thale cress	plastid	71.81	25.81
KRH73916	Soybean	plastid	60.64	21.35
VIT_19s0015g00650.t01	Wine grape	plastid	59.57	21.33
PGSC0003DMT400076617	Potato	cytosol, plastid	59.57	20.33
Solyc12g015710.1.1	Tomato	cytosol	59.04	19.68
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	54.26	18.51
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	53.72	18.33
OQU89660	Sorghum	plastid	54.26	17.77
TraesCS5D01G260700.1	Wheat	mitochondrion	53.72	17.75
Os09t0477900-01	Rice	mitochondrion, plastid	53.72	17.72
HORVU5Hr1G071070.1	Barley	plastid	54.26	17.71
GSMUA_Achr3P10750_001	Banana	plastid	53.19	17.67
Bra020544.1-P	Field mustard	mitochondrion, plastid	19.68	7.57
Bra036564.1-P	Field mustard	mitochondrion	19.15	7.44
Bra035594.1-P	Field mustard	nucleus	23.4	6.88
Bra002867.1-P	Field mustard	mitochondrion, nucleus	23.4	6.68
Bra026418.1-P	Field mustard	plastid	20.74	6.08
Bra011816.1-P	Field mustard	cytosol, mitochondrion	17.02	4.48
Bra030242.1-P	Field mustard	nucleus	17.02	4.04
Bra038528.1-P	Field mustard	nucleus	17.02	3.95

Protein Annotations

EnsemblPlants:Bra022117.1	EnsemblPlants:Bra022117.1-P	EnsemblPlantsGene:Bra022117	Gene3D:3.40.50.150	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR001678
InterPro:MeTrfase_RsmB/NOP2	InterPro:SAM-dependent_MTases	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53	PFAM:PF01189	SUPFAM:SSF53335
UniParc:UPI0002546135	UniProt:M4E020	MapMan:35.2	:	:	:

Description

AT3G13180 (E=9e-025) | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein

Coordinates

chrA02:-:19481883..19483261

Molecular Weight (calculated)

20951.4 Da

IEP (calculated)

5.870

GRAVY (calculated)

0.011

Length

188 amino acids

Sequence
(BLAST)

001: MQCCCGIERL ETSRVVGELM WVDMLMISVV KPQPGDRILN ACAAPGGKTL FMAYCLKHQG RLRILGETAK SHQVDGLYHS HSCRSTCLRC ELLLFEADLR
101: LNCKLEDMEE LKILQDELLD SASNTCSIDP EENQGRVEAF LLRHHEFSVD LVDRLVPSSF VTSQGVFLSN PVKHSLDGAF AASLVRAL

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.