Factsheet for PGSC0003DMT400076617

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 7
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g015710.1.1	Tomato	cytosol	95.28	93.09
VIT_19s0015g00650.t01	Wine grape	plastid	71.51	75.05
CDY24205	Canola	plastid	69.51	73.65
CDY43364	Canola	plastid	69.15	72.85
Bra039376.1-P	Field mustard	plastid	68.97	72.66
AT3G13180.1	Thale cress	plastid	68.97	72.66
KRH73916	Soybean	plastid	68.97	71.16
CDX85924	Canola	cytosol	16.7	70.77
CDY28964	Canola	cytosol	17.06	70.15
GSMUA_Achr3P10750_001	Banana	plastid	64.43	62.72
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	61.34	61.34
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	61.34	61.34
Os09t0477900-01	Rice	mitochondrion, plastid	62.07	60.0
TraesCS5D01G260700.1	Wheat	mitochondrion	61.71	59.75
Bra022117.1-P	Field mustard	cytosol	20.33	59.57
OQU89660	Sorghum	plastid	61.52	59.06
HORVU5Hr1G071070.1	Barley	plastid	61.34	58.68
CDY66223	Canola	mitochondrion	24.86	53.73
KRH14216	Soybean	cytosol	27.95	53.1
PGSC0003DMT400057532	Potato	nucleus	21.05	18.21
PGSC0003DMT400021199	Potato	cytosol, plastid	14.16	16.22
PGSC0003DMT400041672	Potato	nucleus	13.25	8.31

Protein Annotations

Gene3D:1.10.940.10	EntrezGene:102595970	Gene3D:3.40.50.150	MapMan:35.2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008649	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0031167	GO:GO:0032259	InterPro:IPR001678	InterPro:IPR035926	UniProt:M1CX39
InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	PFAM:PF01029	PFAM:PF01189	EnsemblPlantsGene:PGSC0003DMG402029795
PGSC:PGSC0003DMG402029795	EnsemblPlants:PGSC0003DMT400076617	PRINTS:PR02008	PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807
PANTHER:PTHR22807:SF53	InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	SUPFAM:SSF48013	SUPFAM:SSF53335
TIGRFAMs:TIGR00563	UniParc:UPI0002956095	RefSeq:XP_006344891.1	RefSeq:XP_006344892.1	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg

Description

Ribosomal RNA small subunit methyltransferase B [Source:PGSC_GENE;Acc:PGSC0003DMG402029795]

Coordinates

chr12:-:9805835..9814614

Molecular Weight (calculated)

61875.6 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.252

Length

551 amino acids

Sequence
(BLAST)

001: MEIWNFPACS FFSDHHTHTI MPSLLSGRIL HFPKLSATSS SESYSSKQVK FPKKISQNPA TSVRPADSGS PLRKTHKLNL EVSPHRAVSA VRLMRIEFGG
101: AFADLLNEQG KGSGDNEMGY VERTLGFRTR DLDDRDLRLV TEVVGGTIRW RRYLDHLILS LCHDERTFRS MEPLLVQILR IGFYEITKLD MPPYAVVDES
201: VRLAKVALRP GAGNLVNGIL RKLAVLKESD SLPAVEVDGD DRQQARGLAT LYSHPVWMVR RWTKYFGQDT AIKLMTWNNS YPSFSLRANT GKGLTGADLV
301: SRLKMLKVPH EPSLYLDDFV RLKTGMQNVI QAGLLKEGFC AVQDESAGLV VSIVDPQPGE NIIDCCAAPG GKTLFMASRL NGQGKLFAVD INEGRLRILR
401: ETAKLHQVID VISTIHSDLR TFSTDKVVEW DKVLLDAPCS GLGVLSKRAD LRWNRRLEDM EQLKHLQDEL LDSASRLVKP GGVLIYSTCS IDPEENEERI
501: EAFLLRHPEF YIDPVNKYVP ENFVTNRGFC MSNPVKHELD GAFAARLVRS Q

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.