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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24205 Canola plastid 92.54 93.08
CDY43364 Canola plastid 92.93 92.93
Bra039376.1-P Field mustard plastid 92.73 92.73
CDX85924 Canola cytosol 21.8 87.69
CDY28964 Canola cytosol 21.99 85.82
VIT_19s0015g00650.t01 Wine grape plastid 72.85 72.57
Bra022117.1-P Field mustard cytosol 25.81 71.81
KRH73916 Soybean plastid 72.28 70.79
PGSC0003DMT400076617 Potato cytosol, plastid 72.66 68.97
Solyc12g015710.1.1 Tomato cytosol 73.42 68.09
CDY66223 Canola mitochondrion 31.55 64.71
GSMUA_Achr3P10750_001 Banana plastid 67.88 62.72
TraesCS5A01G253000.1 Wheat mitochondrion, plastid 64.82 61.52
TraesCS5B01G251800.1 Wheat mitochondrion, plastid 64.82 61.52
TraesCS5D01G260700.1 Wheat mitochondrion 65.01 59.75
Os09t0477900-01 Rice mitochondrion, plastid 64.24 58.95
HORVU5Hr1G071070.1 Barley plastid 64.63 58.68
OQU89660 Sorghum plastid 63.29 57.67
KRH14216 Soybean cytosol 29.06 52.41
AT5G55920.1 Thale cress nucleus 21.22 16.28
AT4G26600.5 Thale cress plastid 21.61 16.1
AT5G26180.3 Thale cress plastid 15.87 14.64
AT4G17590.1 Thale cress cytosol 5.16 13.43
AT4G40000.1 Thale cress nucleus 13.96 9.32
AT2G22400.1 Thale cress cytosol 13.77 8.91
Protein Annotations
Gene3D:1.10.940.10Gene3D:3.40.50.150MapMan:35.2EntrezGene:820508ProteinID:AEE75306.1EMBL:AK226254
ArrayExpress:AT3G13180EnsemblPlantsGene:AT3G13180RefSeq:AT3G13180TAIR:AT3G13180RefSeq:AT3G13180-TAIR-GEnsemblPlants:AT3G13180.1
TAIR:AT3G13180.1EMBL:AY072189EMBL:AY117322Unigene:At.39475GO:GO:0001510GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0005488GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0008173GO:GO:0008757GO:GO:0009058
GO:GO:0009987GO:GO:0016740GO:GO:0032259InterPro:IPR001678InterPro:IPR035926InterPro:MeTrfase_RsmB/NOP2
RefSeq:NP_187924.2InterPro:NusB-like_sfInterPro:NusB_RsmB_TIM44PFAM:PF01029PFAM:PF01189PO:PO:0000013
PO:PO:0000037PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PRINTS:PR02008PRINTS:PR02009PFscan:PS51686PANTHER:PTHR22807
PANTHER:PTHR22807:SF53UniProt:Q8VYC4InterPro:RCMTInterPro:RCMT_RsmB-rel_plnInterPro:SAM-dependent_MTasesSUPFAM:SSF48013
SUPFAM:SSF53335UniParc:UPI00000A8BE7SEG:seg:::
Description
NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
Coordinates
chr3:-:4235950..4240116
Molecular Weight (calculated)
58348.7 Da
IEP (calculated)
9.402
GRAVY (calculated)
-0.231
Length
523 amino acids
Sequence
(BLAST)
001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.