Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G26600.5 | Thale cress | plastid | 27.36 | 7.83 |
| AT5G55920.1 | Thale cress | nucleus | 24.38 | 7.18 |
| AT5G26180.3 | Thale cress | plastid | 15.42 | 5.47 |
| AT3G13180.1 | Thale cress | plastid | 13.43 | 5.16 |
| AT4G40000.1 | Thale cress | nucleus | 16.42 | 4.21 |
| AT2G22400.1 | Thale cress | cytosol | 16.92 | 4.21 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.2 | EntrezGene:827478 | ProteinID:AEE83917.1 | ArrayExpress:AT4G17590 | EnsemblPlantsGene:AT4G17590 |
| RefSeq:AT4G17590 | TAIR:AT4G17590 | RefSeq:AT4G17590-TAIR-G | EnsemblPlants:AT4G17590.1 | TAIR:AT4G17590.1 | Unigene:At.54377 |
| UniProt:F4JP84 | GO:GO:0000470 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0009383 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0070475 | InterPro:IPR001678 |
| InterPro:MeTrfase_RsmB/NOP2 | RefSeq:NP_193494.4 | PFAM:PF01189 | PANTHER:PTHR22807 | PANTHER:PTHR22807:SF30 | UniParc:UPI0001A7B0FE |
Description
CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 459 Bl /.../ts to 368 proteins in 186 species: Archae - 2; Bacteria - 0; Metazoa - 137; Fungi - 144; Plants - 100; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). [Source:TAIR;Acc:AT4G17590]
Coordinates
chr4:-:9800843..9802591
Molecular Weight (calculated)
22585.3 Da
IEP (calculated)
7.183
GRAVY (calculated)
-0.083
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEHSKDSEN ISFSTAFGPR ISRMPATELV NDEPESLPIG ETPEHLSGRF MVIKGIIFAN ASTEHLLGSL YANLHRMGIT NTVVSNYNIN TKLSRVFHIN
101: SKDMVLVNAP STRTGLISEF GSIKMSINEE ADIQRFGVLQ KIVEGVHMSD YVDQLKDDIA SLYGYNRFLI RTLAATFSLA ELVKLIKAFE KLRSTYIRRI
201: L
101: SKDMVLVNAP STRTGLISEF GSIKMSINEE ADIQRFGVLQ KIVEGVHMSD YVDQLKDDIA SLYGYNRFLI RTLAATFSLA ELVKLIKAFE KLRSTYIRRI
201: L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.