Factsheet for Solyc12g015710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076617	Potato	cytosol, plastid	93.09	95.28
VIT_19s0015g00650.t01	Wine grape	plastid	70.21	75.43
CDY24205	Canola	plastid	68.09	73.85
AT3G13180.1	Thale cress	plastid	68.09	73.42
Bra039376.1-P	Field mustard	plastid	67.73	73.04
CDY43364	Canola	plastid	67.73	73.04
KRH73916	Soybean	plastid	67.55	71.35
CDX85924	Canola	cytosol	15.78	68.46
CDY28964	Canola	cytosol	16.13	67.91
GSMUA_Achr3P10750_001	Banana	plastid	62.94	62.72
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	60.64	62.07
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	60.46	61.89
TraesCS5D01G260700.1	Wheat	mitochondrion	60.99	60.46
Os09t0477900-01	Rice	mitochondrion, plastid	60.82	60.18
OQU89660	Sorghum	plastid	60.99	59.93
HORVU5Hr1G071070.1	Barley	plastid	61.17	59.9
Bra022117.1-P	Field mustard	cytosol	19.68	59.04
CDY66223	Canola	mitochondrion	23.76	52.55
KRH14216	Soybean	cytosol	26.95	52.41
Solyc07g052110.2.1	Tomato	nucleus	21.81	17.42
Solyc08g062440.1.1	Tomato	endoplasmic reticulum	6.38	16.74
Solyc08g062560.2.1	Tomato	nucleus	13.48	16.52
Solyc05g051520.2.1	Tomato	nucleus	12.77	8.75
Solyc11g010110.1.1	Tomato	nucleus	12.94	8.31

Protein Annotations

Gene3D:1.10.940.10	Gene3D:3.40.50.150	MapMan:35.2	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0008649	GO:GO:0008757
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0031167	GO:GO:0032259	InterPro:IPR001678
InterPro:IPR035926	UniProt:K4DD07	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	PFAM:PF01029
PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53
InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	SUPFAM:SSF48013	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc12g015710.1
EnsemblPlants:Solyc12g015710.1.1	TIGRFAMs:TIGR00563	UniParc:UPI000276A977	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:5687873..5695832

Molecular Weight (calculated)

63007.8 Da

IEP (calculated)

8.363

GRAVY (calculated)

-0.251

Length

564 amino acids

Sequence
(BLAST)

001: MQKIGSISDT VMEILNFPAS SFFSDQHAHT IMPILFSGRT LHFPKLSATS SSSSESHNSK QVKFAKKISQ NSATSVRRAG SGSPLRKTHK LNLEVSPHRA
101: VSAVRLMRIE LGGAFADLLN EQGKGSGDNE MGYVERTLGF RTRDLDDRDL RLVTEVVGGT IRWRRYLDHL ILSLCHDERT FRSMEPLLVQ ILRIGFYEIT
201: KLDMPPYAVV DESVRLAKVA LRPGAGNLVN GILRKLAVLK ESDSLPAVEV NGDDRQQARG LATLYSHPVW MVRRWTKYFG QDEAIKLMTW NNSYPSFSLR
301: ANTGKGLTGA DLVSRLNMLK VPHEPSLYLD DFVRLKTGMQ NVIQAGLLKE GFCAVQDESA GLVVSIVDPQ PGENIIDCCA APGGKTLFMA SRLNGQGKLF
401: AVDINEGRLR ILRETAKLHQ VIDVISTIHS DLRSFSTDKL VEWDKVLLDA PCSGLGVLSK RADLRWNRKL EDMEQLKHLQ DELLDSASRL VKAGGVLIYS
501: TCSIDPEENE ERIEAFLSRH PEFDIDPVNK YVPENFITTR GFYMSNPVKH ELDGAFAARL VRSQ

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.