Factsheet for GSMUA_Achr3P10750_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00650.t01	Wine grape	plastid	64.31	69.33
CDY24205	Canola	plastid	63.07	68.65
Bra039376.1-P	Field mustard	plastid	62.72	67.88
CDY43364	Canola	plastid	62.72	67.88
AT3G13180.1	Thale cress	plastid	62.72	67.88
KRH73916	Soybean	plastid	62.01	65.73
PGSC0003DMT400076617	Potato	cytosol, plastid	62.72	64.43
Solyc12g015710.1.1	Tomato	cytosol	62.72	62.94
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	60.78	62.43
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	60.42	62.07
Os09t0477900-01	Rice	mitochondrion, plastid	61.66	61.23
CDY28964	Canola	cytosol	14.49	61.19
OQU89660	Sorghum	plastid	61.31	60.45
TraesCS5D01G260700.1	Wheat	mitochondrion	60.6	60.28
CDX85924	Canola	cytosol	13.78	60.0
HORVU5Hr1G071070.1	Barley	plastid	60.78	59.72
Bra022117.1-P	Field mustard	cytosol	17.67	53.19
CDY66223	Canola	mitochondrion	22.26	49.41
KRH14216	Soybean	cytosol	25.27	49.31
GSMUA_Achr7P20140_001	Banana	nucleus	19.96	18.86
GSMUA_Achr5P24950_001	Banana	mitochondrion	15.19	16.76
GSMUA_Achr7P19120_001	Banana	nucleus	13.43	9.13

Protein Annotations

Gene3D:1.10.940.10	Gene3D:3.40.50.150	MapMan:35.2	InterPro:Fmu/NOL1/Nop2p_CS	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008649	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0031167	GO:GO:0032259	EnsemblPlantsGene:GSMUA_Achr3G10750_001	EnsemblPlants:GSMUA_Achr3P10750_001	EnsemblPlants:GSMUA_Achr3T10750_001
InterPro:IPR001678	InterPro:IPR035926	UniProt:M0SDJ2	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44
PFAM:PF01029	PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02009	ScanProsite:PS01153	PFscan:PS51686
PANTHER:PTHR22807	PANTHER:PTHR22807:SF53	InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	SUPFAM:SSF48013
SUPFAM:SSF53335	TIGRFAMs:TIGR00563	UniParc:UPI000294E8F2	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg	:

Description

Putative Ribosomal RNA small subunit methyltransferase B [Source:GMGC_GENE;Acc:GSMUA_Achr3G10750_001]

Coordinates

chr3:-:7919272..7939118

Molecular Weight (calculated)

63137.7 Da

IEP (calculated)

9.797

GRAVY (calculated)

-0.172

Length

566 amino acids

Sequence
(BLAST)

001: MLTTQFHITI FYPSHLSRIP FKAKMVGAFS SYSHFPLSSS VCALSAPRKS SSTFFPPLAS IPNARISHRA AGPPGSRKKT SDNLIAEISP HRAASAVRLL
101: RIEHGGAFAD LLNEKGRNSA ENEMGYVERT LGFRTRDLDD RDMRLVTEIV GGTVRWRRYL DHLIMSLCSE EKMFRDMEPL LLQVLRIGFY EIIKLGMPPY
201: AVVDENVKLA KRALRPGAGN LVNGILRKLV SLKETDSLPL PKVAGDDRAQ ARALAIIHSH PVWMVRRWMK FWGIEESVRL MNWNNSDPCF GLRVNTAKGY
301: TRNDLVNRLK SLKVPHELST FLEDFVRLQT GMQTVIQAGL LKEGICSVQD ESAGLVVSVV NPQPGDTIVD CCAAPGGKTL FLASRLKSQG MVLAIDVNKG
401: RLRILKEASR SHNVNDVVTT TNADLRLYAE KHNLKFDKVL LDAPCSGLGV LSKRADLRWN RRLEDLEQLM NLQDELFNAA SMLVKPGGVL VYSTCSIDPA
501: ENEERVSAFL LRHPEFVVQP VHGFVPPDCI TEKGYYFSNP VKHHIDGSFA ARLVKSSRST CQKPIP

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.