CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	78.22	81.49
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	78.05	81.31
Os09t0477900-01	Rice	mitochondrion, plastid	80.66	81.23
TraesCS5D01G260700.1	Wheat	mitochondrion	78.92	79.61
HORVU5Hr1G071070.1	Barley	plastid	76.31	76.04
VIT_19s0015g00650.t01	Wine grape	plastid	59.93	65.52
CDY24205	Canola	plastid	57.67	63.65
AT3G13180.1	Thale cress	plastid	57.67	63.29
CDY43364	Canola	plastid	57.49	63.1
Bra039376.1-P	Field mustard	plastid	57.49	63.1
PGSC0003DMT400076617	Potato	cytosol, plastid	59.06	61.52
GSMUA_Achr3P10750_001	Banana	plastid	60.45	61.31
KRH73916	Soybean	plastid	56.97	61.24
CDY28964	Canola	cytosol	14.29	61.19
Solyc12g015710.1.1	Tomato	cytosol	59.93	60.99
CDX85924	Canola	cytosol	13.59	60.0
Bra022117.1-P	Field mustard	cytosol	17.77	54.26
CDY66223	Canola	mitochondrion	22.13	49.8
KRH14216	Soybean	cytosol	24.22	47.93
KXG30856	Sorghum	nucleus, plastid	20.03	16.62
KXG29808	Sorghum	plastid	14.11	16.3
KXG25732	Sorghum	mitochondrion	12.72	8.64
EER96904	Sorghum	nucleus	12.54	8.24

Protein Annotations

Gene3D:1.10.940.10	Gene3D:3.40.50.150	MapMan:35.2	EntrezGene:8083285	UniProt:C5X355	ProteinID:EER96923.1
GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0008649	GO:GO:0008757	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0031167	GO:GO:0032259	InterPro:IPR001678	InterPro:IPR035926	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf
InterPro:NusB_RsmB_TIM44	EnsemblPlants:OQU89660	ProteinID:OQU89660	ProteinID:OQU89660.1	PFAM:PF01029	PFAM:PF01189
PRINTS:PR02008	PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53	MetaCyc:PWY-6825
InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	EnsemblPlantsGene:SORBI_3002G237800	SUPFAM:SSF48013	SUPFAM:SSF53335
unigene:Sbi.20408	TIGRFAMs:TIGR00563	UniParc:UPI0001A83711	RefSeq:XP_002460402.1	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:62809958..62822529

Molecular Weight (calculated)

63480.8 Da

IEP (calculated)

8.828

GRAVY (calculated)

-0.187

Length

574 amino acids

Sequence
(BLAST)

001: MEGVAPAVSL FRPRASARPT IVLAENSGSA RRSPGAGGRS RGVSRLSPEM SPGGASRRMS KLRKHGSREA EAAARSGITR VPNLGTAVST KRAGMSKDTV
101: INLDVSHHRA VAVVRLLRIE KGKAFVDLLN EKANDSGEKE IGYVERTLGF STRYLDDRDI RLVTVIVAGT VRWKRYLDYL IMSLCSEEKV FREMEPLLLQ
201: ILRIGFFEIL KLDVPAYAAV DENVKLAKVA LRPGAGNMVN AILRKLVLLK ETDSLPLPKI EGDDRAQARA LSIIYSHPVW MVRRWIRFHG KDEALRLMNW
301: NNSDPHFSLR VNTSKGYTRA DLVKRLESLQ VHYEESVMDG FVRIQEGMQA VLQAGLLKDG ICAVQDESAG LVVSVVDPQP GETIVDCCAA PGGKTLFMAS
401: RLSGEGKIQA LDINKGRLRI LMDAAKLHGL DDIITDIHAD LRLYAKETTA KYDKVLLDAP CSGLGVLSKR ADLRWNRQFE DLEELICLQD ELLDSASMLV
501: RPGGILIYST CSIDPEENEK RIAAFVQRHP EFAPQSVCGY VPTEFITDEG FYSSNPTKHS MDGAFAARLV RSSH

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.