CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28964	Canola	cytosol	27.59	59.7
CDX85924	Canola	cytosol	26.55	59.23
Bra022117.1-P	Field mustard	cytosol	31.72	48.94
CDY66223	Canola	mitochondrion	35.52	40.39
KRH73916	Soybean	plastid	65.86	35.77
VIT_19s0015g00650.t01	Wine grape	plastid	55.86	30.86
AT3G13180.1	Thale cress	plastid	52.41	29.06
CDY24205	Canola	plastid	52.07	29.04
CDY43364	Canola	plastid	52.07	28.87
Bra039376.1-P	Field mustard	plastid	51.72	28.68
PGSC0003DMT400076617	Potato	cytosol, plastid	53.1	27.95
Solyc12g015710.1.1	Tomato	cytosol	52.41	26.95
Os09t0477900-01	Rice	mitochondrion, plastid	50.34	25.61
GSMUA_Achr3P10750_001	Banana	plastid	49.31	25.27
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	47.93	25.23
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	47.59	25.05
TraesCS5D01G260700.1	Wheat	mitochondrion	48.62	24.78
HORVU5Hr1G071070.1	Barley	plastid	48.97	24.65
OQU89660	Sorghum	plastid	47.93	24.22
KRG98455	Soybean	nucleus	25.52	11.94
KRH46413	Soybean	nucleus	24.48	11.56
KRH59299	Soybean	cytosol	12.41	11.32
KRH61558	Soybean	nucleus	18.97	11.13
KRH52232	Soybean	nucleus	18.62	11.0
KRH43150	Soybean	nucleus	20.0	7.07
KRH31314	Soybean	cytosol	19.66	6.99
KRH75188	Soybean	cytosol	6.9	6.39
KRG97553	Soybean	extracellular, plasma membrane	6.21	4.38
KRH59300	Soybean	mitochondrion	4.48	2.68
KRH45277	Soybean	cytosol	0.34	0.91

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	UniProt:A0A0R0GGB3	EMBL:ACUP02008494	EnsemblPlantsGene:GLYMA_14G013100	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0008757	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	InterPro:IPR001678	EnsemblPlants:KRH14216	ProteinID:KRH14216	ProteinID:KRH14216.1
InterPro:MeTrfase_RsmB/NOP2	PFAM:PF01189	PRINTS:PR02008	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53
MetaCyc:PWY-6825	InterPro:RCMT	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0006EDC187	:

Description

hypothetical protein

Coordinates

chr14:+:983795..987274

Molecular Weight (calculated)

32636.0 Da

IEP (calculated)

5.307

GRAVY (calculated)

-0.048

Length

290 amino acids

Sequence
(BLAST)

001: MSHTKLSLHL DEFVHIKTGL QVCEFPNLYN EFLWSQTLIR GEKFCGLNFT YFLPYVIANS FNIDSVKLCF IRLLTYCLVV SVVDPQPGET IIDCCAAPGG
101: KTHYMASHLS GQVVENSYKE TAKLHQVDGI IIAIHADLRT LPDSGQLKSN KVLLDAPCSG LGVLSKRVDL RWNRNLEDME QLKEFQDELL DAASKLVKPG
201: GVLVYSSCSI DPEENDDRVF LVTHPDFHID PVDRYVPPDF VTSSGFFFSN PVKHSVDGSF AAHLVRDLLN EFPGSNSLWL YPQLRDIQIQ

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.