CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43364	Canola	plastid	99.42	98.85
CDX85924	Canola	cytosol	23.65	94.62
AT3G13180.1	Thale cress	plastid	93.08	92.54
CDY28964	Canola	cytosol	23.85	92.54
VIT_19s0015g00650.t01	Wine grape	plastid	73.08	72.38
KRH73916	Soybean	plastid	72.31	70.41
PGSC0003DMT400076617	Potato	cytosol, plastid	73.65	69.51
CDY66223	Canola	mitochondrion	34.04	69.41
Solyc12g015710.1.1	Tomato	cytosol	73.85	68.09
GSMUA_Achr3P10750_001	Banana	plastid	68.65	63.07
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	64.42	60.8
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	64.42	60.8
TraesCS5D01G260700.1	Wheat	mitochondrion	64.62	59.05
Os09t0477900-01	Rice	mitochondrion, plastid	64.23	58.6
HORVU5Hr1G071070.1	Barley	plastid	64.42	58.16
OQU89660	Sorghum	plastid	63.65	57.67
KRH14216	Soybean	cytosol	29.04	52.07
CDY06550	Canola	nucleus	21.35	17.54
CDX89321	Canola	plastid	21.35	17.37
CDY68035	Canola	nucleus	21.35	17.16
CDX94307	Canola	plastid	20.77	16.95
CDX91690	Canola	cytosol, plastid	6.54	16.59
CDY28628	Canola	nucleus	20.77	16.49
CDY06532	Canola	cytosol	11.73	16.31
CDY17367	Canola	mitochondrion, nucleus	20.96	16.29
CDY19785	Canola	plastid	15.0	16.12
CDY17518	Canola	cytosol	6.35	16.1
CDY24989	Canola	plastid	15.0	15.95
CDY05536	Canola	plastid	15.0	15.95
CDX87063	Canola	plastid	14.62	15.7
CDY65896	Canola	nucleus	6.73	15.35
CDY62126	Canola	cytosol	6.73	15.28
CDY15291	Canola	nucleus	3.65	12.26
CDY68255	Canola	cytosol, mitochondrion	14.42	10.5
CDX69365	Canola	cytosol	14.62	10.5
CDX89460	Canola	nucleus	14.42	9.59
CDY25593	Canola	nucleus	14.23	9.33
CDX76928	Canola	nucleus	14.42	9.29
CDY13765	Canola	nucleus	14.23	9.14

Protein Annotations

KEGG:00564+2.1.1.17	Gene3D:1.10.940.10	Gene3D:3.40.50.150	MapMan:35.2	GO:A0A078GCI3	UniProt:A0A078GCI3
EnsemblPlants:CDY24205	ProteinID:CDY24205	ProteinID:CDY24205.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00026305001
InterPro:IPR001678	InterPro:IPR035926	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	PFAM:PF01029
PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53
MetaCyc:PWY-6825	InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	SUPFAM:SSF48013	SUPFAM:SSF53335
UniParc:UPI0004EE7BDC	SEG:seg	:	:	:	:

Description

BnaC01g37850DBnaC01g37850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCI3]

Coordinates

chrLK032155:+:247557..250962

Molecular Weight (calculated)

58129.6 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.220

Length

520 amino acids

Sequence
(BLAST)

001: MAQLLSFRVY LSAETQKASP ESFKRTQKTR KPFTPGQRGP VRKPQNLNLE VSPHRAVSAV RLMRIEFGGA FADLLNEKGK GSGSNEMSYV ERTIGFRTRD
101: LDDRDLRLVT DVVGGTIRWR RYLDHLIGSL CHNERTFRNM EPLLLQILRI GFYEIIKLDM PAYAVVDENV RLAKIALRPG AGDLVNGILR KLVSLKEKDA
201: LPLPKVEGDD RAQARALATL HSHPVWMVRR WVKYLGLDEA TKLMTWNNTD PGFSLRANMG RGITRADLVE RLNSLKVPHE LSLHLEDFVR IKTGLQMVVQ
301: AGLLKEGICS VQDESAGLVV SVVKPQPGDR ILDACAAPGG KTLFMASCLK RQGMIYAMDV NEGRLRILGE TAKSHQVNGL ITTIHSDLRV FAETKEVQYD
401: KVLLDAPCSG LGVLSKRADL RWNRKLEDME ELTNLQDELL DSASKLVKPG GFLIYSTCSI DPEENQGRVE AFLLRHPEFS VDPVDRLVPS SFVTPQGFFL
501: SNPVKHSLDG AFAARLVRAL

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.