CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035594.1-P	Field mustard	nucleus	96.52	95.47
CDY68035	Canola	nucleus	97.31	95.21
CDY28628	Canola	nucleus	83.57	80.76
CDY17367	Canola	mitochondrion, nucleus	83.57	79.07
CDY62126	Canola	cytosol	27.01	74.67
CDX91690	Canola	cytosol, plastid	23.54	72.68
CDY65896	Canola	nucleus	25.91	71.93
AT5G55920.1	Thale cress	nucleus	76.94	71.41
CDY17518	Canola	cytosol	22.75	70.24
CDX94307	Canola	plastid	68.72	68.29
CDX89321	Canola	plastid	68.25	67.61
GSMUA_Achr7P20140_001	Banana	nucleus	50.71	53.59
CDY06532	Canola	cytosol	31.6	53.48
Os09t0551300-02	Rice	nucleus	52.92	47.93
Os02t0724600-01	Rice	nucleus	52.45	47.91
KXG30856	Sorghum	nucleus, plastid	51.66	47.25
Zm00001d051652_P003	Maize	plasma membrane	51.18	45.13
Zm00001d017887_P004	Maize	plastid	51.34	44.28
HORVU6Hr1G072030.1	Barley	plastid	51.34	42.99
TraesCS6B01G315600.1	Wheat	plastid	51.82	42.93
TraesCS6D01G267300.1	Wheat	plastid	51.82	42.76
TraesCS6A01G286600.1	Wheat	nucleus	51.82	42.43
CDY28964	Canola	cytosol	6.64	31.34
CDX85924	Canola	cytosol	6.32	30.77
CDY66223	Canola	mitochondrion	9.64	23.92
CDY24205	Canola	plastid	17.54	21.35
CDY43364	Canola	plastid	17.54	21.22
CDY19785	Canola	plastid	15.32	20.04
CDY24989	Canola	plastid	15.48	20.04
CDY05536	Canola	plastid	15.32	19.84
CDX87063	Canola	plastid	15.01	19.63
CDX69365	Canola	cytosol	15.64	13.67
CDY68255	Canola	cytosol, mitochondrion	15.32	13.59
CDX89460	Canola	nucleus	16.11	13.04
CDX76928	Canola	nucleus	16.43	12.89
CDY25593	Canola	nucleus	16.11	12.86
CDY13765	Canola	nucleus	16.27	12.72
CDY15291	Canola	nucleus	3.0	12.26

Protein Annotations

KEGG:00564+2.1.1.17	MapMan:17.1.2.2.3.6	Gene3D:3.30.70.3130	Gene3D:3.40.50.150	GO:A0A078EWX0	EnsemblPlants:CDY06550
ProteinID:CDY06550	ProteinID:CDY06550.1	ncoils:Coil	InterPro:Fmu/NOL1/Nop2p_CS	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
EnsemblPlantsGene:GSBRNA2T00122670001	InterPro:IPR001678	InterPro:MeTrfase_RsmB/NOP2	InterPro:Methyltr_RsmF_N	InterPro:Nop2p	PFAM:PF01189
PFAM:PF17125	PRINTS:PR02008	PRINTS:PR02012	ScanProsite:PS01153	PFscan:PS51686	PANTHER:PTHR22807
PANTHER:PTHR22807:SF30	MetaCyc:PWY-6825	InterPro:RCMT	InterPro:RCMT_NOP2	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
TIGRFAMs:TIGR00446	UniParc:UPI0004EDDBF3	SEG:seg	:	:	:

Description

BnaC02g12740D

Coordinates

chrLK031971:+:260960..264628

Molecular Weight (calculated)

71064.0 Da

IEP (calculated)

6.086

GRAVY (calculated)

-0.831

Length

633 amino acids

Sequence
(BLAST)

001: MVLTRSSKKA PKPQTPPVKN LSKAQTPPLS KAEKPQTLTS KKGAKSQKKP PLKKQKKDVI IDESDDGEKG SNGFFSDDDG EELLNDNFLD GSDDDEEEER
101: SDSDEALSSD SDSDEDDIQK ESEAIDRAKA KEEEDADAEL LDFNKEDGPE EHETFRLPTQ EELEEEARGP PDLPLLQSRI KEIVRALSNF NVLRPNGASR
201: KECVEQLKSD LASYYGYNSF LIGALFELFP PVELMEIIQA FEKQRPTSIR TNTLKTRRRD LADVLLNRGV NLDPLSKWSK VGLVVYDSQV PIGATPEYLA
301: GYYMLQGASS FLPVMALAPK ENERIVDVAA APGGKTTYVA ALMKNTGLIF ANEMKVPRLK SLTANLHRMG VTNTIVCNYD GRELPKVLGE RSVDRVLLDA
401: PCSGTGVISK DESVKTSKSL EDIKRFAHLQ KQLLLAAIDL VDATSKTGGY IVYSTCSLMV AENEAVIDYA LKKRNVQLVK TGLDFGQDGY RRFREHRFHP
501: SLKQTKRFYP HVHNMDGFFV AKLKKMSNMK QSSEDDDEAV ETVEQADVSS DDDEEAEAME EMEKLSVPSK QPKENKERLA KSKEKKKGKK DGKSKSKNVE
601: RKPKKKRSDW KKEIAQAREE KRRAMRENSK GKQ

Best Arabidopsis Sequence Match ( AT5G55920.1 )
(BLAST)

001: MPALTRNKKK AATKSITPPT KQLTKSKTPP MKPQTSMLKK GAKSQNKPPL KKQKKEVVEE EPLEDYEVTD DSDEDDEVSD GSDEDDISPA VESEEIDESD
101: DGENGSNQLF SDDEEENDEE TLGDDFLEGS GDEDEEGSLD ADSDADSDDD DIVAKSDAID RDLAMQKKDA AAELEDFIKQ DDVHDEEPEH DAFRLPTEEE
201: LEEEARGPPD LPLLKTRIEE IVRALKNFKA FRPKDTTRKA CVEQLKADLG SYYGYNSFLI GTLVEMFPPG ELMELIEAFE KQRPTSIRTN TLKTRRRDLA
301: DVLLNRGVNL DPLSKWSKVG LVIYDSQVPI GATPEYLAGY YMLQGASSFL PVMALAPREN ERIVDVAAAP GGKTTYIAAL MKNTGLIYAN EMKVPRLKSL
401: TANLHRMGVT NTIVCNYDGR ELPKVLGQNT VDRVLLDAPC SGTGIISKDE SVKITKTMDE IKKFAHLQKQ LLLAAIDMVD ANSKTGGYIV YSTCSIMVTE
501: NEAVIDYALK KRDVKLVTCG LDFGRKGFTR FREHRFQPSL DKTRRFYPHV HNMDGFFVAK LKKMSNVKQS SEEGDDDAVE TVEQAEVSSD DDDEAEAIEE
601: TEKPSVPVRQ PKERKEKKNK EKLAKSKEDK RGKKDKKSKS ENVEEPSKPR KQKKKRREWK NEIAQAREEK RIAMREKAKE EK

Arabidopsis Description

OLI2Nucleolar protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FG73]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.