CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17367	Canola	mitochondrion, nucleus	98.17	96.11
CDY68035	Canola	nucleus	82.9	83.93
CDY06550	Canola	nucleus	80.76	83.57
AT5G55920.1	Thale cress	nucleus	74.35	71.41
CDX91690	Canola	cytosol, plastid	22.29	71.22
CDY62126	Canola	cytosol	24.89	71.18
CDY65896	Canola	nucleus	24.12	69.3
CDX89321	Canola	plastid	66.87	68.54
CDX94307	Canola	plastid	66.56	68.45
CDY17518	Canola	cytosol	21.07	67.32
CDY06532	Canola	cytosol	30.53	53.48
GSMUA_Achr7P20140_001	Banana	nucleus	48.7	53.26
Os02t0724600-01	Rice	nucleus	51.45	48.63
KXG30856	Sorghum	nucleus, plastid	50.99	48.27
Os09t0551300-02	Rice	nucleus	51.3	48.07
Zm00001d051652_P003	Maize	plasma membrane	50.84	46.38
Zm00001d017887_P004	Maize	plastid	50.84	45.37
HORVU6Hr1G072030.1	Barley	plastid	50.23	43.52
TraesCS6D01G267300.1	Wheat	plastid	50.08	42.76
TraesCS6B01G315600.1	Wheat	plastid	49.62	42.54
TraesCS6A01G286600.1	Wheat	nucleus	50.08	42.43
CDY28964	Canola	cytosol	6.41	31.34
CDX85924	Canola	cytosol	6.11	30.77
CDY66223	Canola	mitochondrion	9.31	23.92
CDY24205	Canola	plastid	16.49	20.77
CDY24989	Canola	plastid	15.42	20.65
CDY05536	Canola	plastid	15.42	20.65
CDY43364	Canola	plastid	16.49	20.65
CDY19785	Canola	plastid	15.11	20.45
CDX87063	Canola	plastid	14.96	20.25
CDX69365	Canola	cytosol	15.11	13.67
CDY68255	Canola	cytosol, mitochondrion	14.81	13.59
CDY15291	Canola	nucleus	3.21	13.55
CDX76928	Canola	nucleus	15.73	12.76
CDX89460	Canola	nucleus	15.11	12.66
CDY13765	Canola	nucleus	15.57	12.59
CDY25593	Canola	nucleus	15.11	12.48

Protein Annotations

KEGG:00564+2.1.1.17	MapMan:17.1.2.2.3.6	Gene3D:3.30.70.3130	Gene3D:3.40.50.150	GO:A0A078GVF6	UniProt:A0A078GVF6
EnsemblPlants:CDY28628	ProteinID:CDY28628	ProteinID:CDY28628.1	ncoils:Coil	InterPro:Fmu/NOL1/Nop2p_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00040686001	InterPro:IPR001678	InterPro:MeTrfase_RsmB/NOP2	InterPro:Methyltr_RsmF_N	InterPro:Nop2p
PFAM:PF01189	PFAM:PF17125	PRINTS:PR02008	PRINTS:PR02012	ScanProsite:PS01153	PFscan:PS51686
PANTHER:PTHR22807	PANTHER:PTHR22807:SF30	MetaCyc:PWY-6825	InterPro:RCMT	InterPro:RCMT_NOP2	InterPro:SAM-dependent_MTases
SUPFAM:SSF53335	TIGRFAMs:TIGR00446	UniParc:UPI0004EF4C9F	SEG:seg	:	:

Description

BnaC09g32470DBnaC09g32470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVF6]

Coordinates

chrLK032224:+:252079..255727

Molecular Weight (calculated)

72756.7 Da

IEP (calculated)

4.861

GRAVY (calculated)

-0.787

Length

655 amino acids

Sequence
(BLAST)

001: MVLTRSKKRV AKSQTPPLKR KAEKPQALAL KKGGAKSQKT PPLKKQKKEV VEEDPSENDD AEVSDDAAST DVESEESDDG EEEGLGSSGF FSDDDGEEND
101: DDGEELLGDD FLEGSGDEEE HSDSGSGSDS DSDEGDIEKE SKLIDEEEAK EEEDAKAELL DFNKEAGDDS FRLPTEEELE EEARGPPDLP LLQSRIKEIV
201: RALSNFSVLR PNGASRKDCV EQLKSDIASY YGYNSFLIGA LFELFPPVEL MELIEAFEKQ RPTSIRTNTL KTRRRDLADV LLNRGVNLDP LSKWSKVGLV
301: VYDSQVPIGA TPEYLAGFYM LQGASSFLPV MALAPQENER IVDVAAAPGG KTTYVAALMK NTGLIFANEM KVPRLKSLTA NLHRMGVTNT IVCNYDGREL
401: PKVLGEKSVD RVLLDAPCSG TGVISKDESV KVSKSLEEIK KFAHLQKQLL LAAIDMVDAT SKTGGYIVYS TCSLMVAENE AVIDYALKKR SVQLVKTGLD
501: FGQDGFVRFR EHRFHPSLNK TKRFYPHVHN MDGFFVAKLK KMSNMKQASE DDDEALGTVD EADVPSDDDE AEAMEGMEKQ PSVPKKQQPK KTKESKEGLA
601: KSKESKKGKK SKSKKGEDPP KIKKQRKNRT EMRMEISQAR EEKRRAMREK SKEKQ

Best Arabidopsis Sequence Match ( AT5G55920.1 )
(BLAST)

001: MPALTRNKKK AATKSITPPT KQLTKSKTPP MKPQTSMLKK GAKSQNKPPL KKQKKEVVEE EPLEDYEVTD DSDEDDEVSD GSDEDDISPA VESEEIDESD
101: DGENGSNQLF SDDEEENDEE TLGDDFLEGS GDEDEEGSLD ADSDADSDDD DIVAKSDAID RDLAMQKKDA AAELEDFIKQ DDVHDEEPEH DAFRLPTEEE
201: LEEEARGPPD LPLLKTRIEE IVRALKNFKA FRPKDTTRKA CVEQLKADLG SYYGYNSFLI GTLVEMFPPG ELMELIEAFE KQRPTSIRTN TLKTRRRDLA
301: DVLLNRGVNL DPLSKWSKVG LVIYDSQVPI GATPEYLAGY YMLQGASSFL PVMALAPREN ERIVDVAAAP GGKTTYIAAL MKNTGLIYAN EMKVPRLKSL
401: TANLHRMGVT NTIVCNYDGR ELPKVLGQNT VDRVLLDAPC SGTGIISKDE SVKITKTMDE IKKFAHLQKQ LLLAAIDMVD ANSKTGGYIV YSTCSIMVTE
501: NEAVIDYALK KRDVKLVTCG LDFGRKGFTR FREHRFQPSL DKTRRFYPHV HNMDGFFVAK LKKMSNVKQS SEEGDDDAVE TVEQAEVSSD DDDEAEAIEE
601: TEKPSVPVRQ PKERKEKKNK EKLAKSKEDK RGKKDKKSKS ENVEEPSKPR KQKKKRREWK NEIAQAREEK RIAMREKAKE EK

Arabidopsis Description

OLI2Nucleolar protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FG73]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.