CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85924	Canola	cytosol	47.45	93.08
CDY28964	Canola	cytosol	47.06	89.55
Bra022117.1-P	Field mustard	cytosol	44.71	60.64
KRH14216	Soybean	cytosol	40.39	35.52
CDY24205	Canola	plastid	69.41	34.04
CDY43364	Canola	plastid	69.41	33.84
AT3G13180.1	Thale cress	plastid	64.71	31.55
VIT_19s0015g00650.t01	Wine grape	plastid	54.12	26.29
KRH73916	Soybean	plastid	53.33	25.47
PGSC0003DMT400076617	Potato	cytosol, plastid	53.73	24.86
Solyc12g015710.1.1	Tomato	cytosol	52.55	23.76
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	49.41	22.87
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	49.02	22.69
GSMUA_Achr3P10750_001	Banana	plastid	49.41	22.26
TraesCS5D01G260700.1	Wheat	mitochondrion	49.41	22.14
OQU89660	Sorghum	plastid	49.8	22.13
HORVU5Hr1G071070.1	Barley	plastid	49.02	21.7
Os09t0477900-01	Rice	mitochondrion, plastid	47.84	21.4
CDY06550	Canola	nucleus	23.92	9.64
CDY24989	Canola	plastid	18.43	9.61
CDY05536	Canola	plastid	18.43	9.61
CDY19785	Canola	plastid	18.04	9.5
CDX87063	Canola	plastid	18.04	9.5
CDY68035	Canola	nucleus	23.92	9.43
CDX94307	Canola	plastid	23.53	9.42
CDX89321	Canola	plastid	23.53	9.39
CDY28628	Canola	nucleus	23.92	9.31
CDY17367	Canola	mitochondrion, nucleus	24.31	9.27
CDY06532	Canola	cytosol	11.37	7.75
CDX91690	Canola	cytosol, plastid	4.71	5.85
CDY68255	Canola	cytosol, mitochondrion	16.08	5.74
CDX69365	Canola	cytosol	16.08	5.66
CDY65896	Canola	nucleus	4.71	5.26
CDX89460	Canola	nucleus	16.08	5.24
CDY62126	Canola	cytosol	4.71	5.24
CDY25593	Canola	nucleus	16.08	5.17
CDX76928	Canola	nucleus	16.08	5.08
CDY13765	Canola	nucleus	16.08	5.06
CDY17518	Canola	cytosol	3.92	4.88
CDY15291	Canola	nucleus	0.78	1.29

Protein Annotations

KEGG:00564+2.1.1.17	Gene3D:3.40.50.150	MapMan:35.2	GO:A0A078JF53	UniProt:A0A078JF53	EnsemblPlants:CDY66223
ProteinID:CDY66223	ProteinID:CDY66223.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259
EnsemblPlantsGene:GSBRNA2T00052330001	InterPro:IPR001678	InterPro:MeTrfase_RsmB/NOP2	PFAM:PF01189	PRINTS:PR02008	PFscan:PS51686
PANTHER:PTHR22807	PANTHER:PTHR22807:SF53	MetaCyc:PWY-6825	InterPro:RCMT	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
SignalP:SignalP-noTM	UniParc:UPI0004EE9362	:	:	:	:

Description

BnaCnng50050DBnaCnng50050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JF53]

Coordinates

chrLK035152:-:3244..5303

Molecular Weight (calculated)

27975.4 Da

IEP (calculated)

10.038

GRAVY (calculated)

0.023

Length

255 amino acids

Sequence
(BLAST)

001: MKRSCYGIRR ASLGLCLAFC FCRPMTSDAT TREKETLTRP DSRLRVLRFS SIGRRGNPVS VTSGRCSSVV DAMLLQYCKA RYVKGGGDLM WVDMLMISVV
101: KPQPGDRILN ACAAPGGKTL FMASCLKRQG RLRILGETAK SHQVVGLITT IHSDLRVFAK TKEVQYDKLL LDAPCSGIGV LSKPGGFLIY STCSIDPEEN
201: QGRVEAFLLR HPEFSVDPVD RLVPSSFVTS QGVFLSNPVK HSLDGVFAAR LVRAL

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.