Factsheet for VIT_19s0015g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73916	Soybean	plastid	77.14	75.84
CDY24205	Canola	plastid	72.38	73.08
AT3G13180.1	Thale cress	plastid	72.57	72.85
CDY43364	Canola	plastid	72.0	72.28
Bra039376.1-P	Field mustard	plastid	71.81	72.08
PGSC0003DMT400076617	Potato	cytosol, plastid	75.05	71.51
Solyc12g015710.1.1	Tomato	cytosol	75.43	70.21
CDY28964	Canola	cytosol	17.14	67.16
CDX85924	Canola	cytosol	16.57	66.92
GSMUA_Achr3P10750_001	Banana	plastid	69.33	64.31
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	66.1	62.98
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	65.52	62.43
HORVU5Hr1G071070.1	Barley	plastid	66.86	60.94
Os09t0477900-01	Rice	mitochondrion, plastid	66.1	60.88
TraesCS5D01G260700.1	Wheat	mitochondrion	65.9	60.81
OQU89660	Sorghum	plastid	65.52	59.93
Bra022117.1-P	Field mustard	cytosol	21.33	59.57
KRH14216	Soybean	cytosol	30.86	55.86
CDY66223	Canola	mitochondrion	26.29	54.12
VIT_19s0015g00840.t01	Wine grape	nucleus	10.1	20.62
VIT_19s0015g00830.t01	Wine grape	nucleus	11.24	16.39
VIT_04s0008g01480.t01	Wine grape	plastid	14.1	14.57
VIT_07s0191g00040.t01	Wine grape	nucleus	15.05	9.44

Protein Annotations

Gene3D:1.10.940.10	EntrezGene:100253242	wikigene:100253242	Gene3D:3.40.50.150	MapMan:35.2	EMBL:AM435471
ProteinID:CAN67145	ProteinID:CAN67145.1	ProteinID:CBI39749	ProteinID:CBI39749.3	UniProt:D7UAI4	EMBL:FN596747
GO:GO:0001510	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008173	GO:GO:0008649	GO:GO:0008757	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0031167	GO:GO:0032259	InterPro:IPR001678	InterPro:IPR035926	EntrezGene:LOC100253242	wikigene:LOC100253242
InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	PFAM:PF01029	PFAM:PF01189	PRINTS:PR02008
PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53	InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln
InterPro:SAM-dependent_MTases	SUPFAM:SSF48013	SUPFAM:SSF53335	TIGRFAMs:TIGR00563	UniParc:UPI00019857DA	ArrayExpress:VIT_19s0015g00650
EnsemblPlantsGene:VIT_19s0015g00650	EnsemblPlants:VIT_19s0015g00650.t01	RefSeq:XP_002266112	RefSeq:XP_002266112.1	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg

Description

No Description!

Coordinates

chr19:-:8721429..8728041

Molecular Weight (calculated)

58344.0 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.149

Length

525 amino acids

Sequence
(BLAST)

001: MAQVLSFGLR IRCSDARRTS SKPLKVAKTR PNTAIPTRST GTRRNANRTY GVNLEISPHR AVSAVRLMRI ELGGAFADLL NERGKGSGDN EMGYVERTLG
101: FRTRDLDDRD LRLVTDIVGG SIRWRRYLDH LIVSLCHDSK TFRSMEPLLL QILRIGFYEI VNLDMPPYAV VDENVRLAKV ALRPGAGNMV NAILRKLVLL
201: KEKNSLPLPK LEGDDRAQAR ALATLYSHPV WMVRRWTKYL GQEEAIKLMM WNNSEPSFSL RANSGKGFTR ADLVMRLKML KVPHELSPHL DNFVRIRTGM
301: QIVIQAQLLK EGLCSVQDES AGLVVSVVDP QPGESIIDCC AAPGGKTIFM ASCLSGQGMV HAIDINKGRL RIVKETAKLL LVDDVITTVH ADLCTFAKNN
401: PVKSDKVLLD APCSGLGVLS KRADLRWNRS LEDMEQLKNL QDELLDAAAI LVKPGGVLVY STCSIDPEEN EERVAAFLQR HPEFSIDPVG RYVPSDFVTE
501: GGFYFSNPVK HALDGAFAAR LVRSS

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.