Factsheet for TraesCS5D01G260700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	94.73	97.82
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	94.38	97.46
HORVU5Hr1G071070.1	Barley	plastid	93.15	92.01
Os09t0477900-01	Rice	mitochondrion, plastid	81.9	81.75
OQU89660	Sorghum	plastid	79.61	78.92
VIT_19s0015g00650.t01	Wine grape	plastid	60.81	65.9
AT3G13180.1	Thale cress	plastid	59.75	65.01
CDY24205	Canola	plastid	59.05	64.62
Bra039376.1-P	Field mustard	plastid	59.23	64.44
CDY43364	Canola	plastid	59.23	64.44
KRH73916	Soybean	plastid	59.23	63.11
CDY28964	Canola	cytosol	14.59	61.94
PGSC0003DMT400076617	Potato	cytosol, plastid	59.75	61.71
Solyc12g015710.1.1	Tomato	cytosol	60.46	60.99
CDX85924	Canola	cytosol	13.88	60.77
GSMUA_Achr3P10750_001	Banana	plastid	60.28	60.6
Bra022117.1-P	Field mustard	cytosol	17.75	53.72
CDY66223	Canola	mitochondrion	22.14	49.41
KRH14216	Soybean	cytosol	24.78	48.62
TraesCS6D01G171500.1	Wheat	plastid	14.06	15.81
TraesCS6D01G267300.1	Wheat	plastid	18.45	13.69
TraesCS4D01G060100.1	Wheat	plastid	13.88	9.53
TraesCS5D01G256900.1	Wheat	cytosol	13.01	8.48

Protein Annotations

Gene3D:1.10.940.10	Gene3D:3.40.50.150	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008649	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR001678	InterPro:IPR035926	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	PFAM:PF01029
PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02009	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF53
InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases	SUPFAM:SSF48013	SUPFAM:SSF53335	TIGRFAMs:TIGR00563
EnsemblPlantsGene:TraesCS5D01G260700	EnsemblPlants:TraesCS5D01G260700.1	TIGR:cd02440	InterPro:rRNA_ssu_MeTfrase_B	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:367232701..367239091

Molecular Weight (calculated)

63255.1 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.252

Length

569 amino acids

Sequence
(BLAST)

001: MEAKALPLSH FRARAGSPLL LSAEASSAAR KGSGAPGRSR TSRYDAGAPP SRAGRGGVWK RDDPEDSPRR TGMTGVPKLN PKFSTKRAGT SKVPIINFEV
101: SHHRAVAAVR LLRADKGKAF VDLLNEKAND SGENEMGYVE RTLGFSTRHL DDRDIRLVTV IVAGTVRWKR YIDYLIMSLC SEEKVFSNME PLLLQILRIG
201: FFEILKLNVP AYAVVDENVR LAKVALRPGA GNMVNAILRK LLLLKETDSL PLPNIEGDDR AQARALSIIY SHPVWMVRRW IRFLGKEEAL KLMNWNNSDP
301: YFSLRVNTTN GYTRDDLVNR LEDLQVHYEK SIMDEFVRIR EGMQAVLQAG LLKEGMCAVQ DESAGFVVSV VDPQPGETIM DCCAAPGGKT LFMASRLAGQ
401: GKVSALDINK GRLRILMEAA KCHNLDDIIT DIHGDLRLYA KESTVKYDKV LLDAPCSGLG VLSKRADLRW NRQFEDLEEL VCLQDELLDS ASLLVKPGGV
501: LIYSTCSIDH EENENRVTTF VQRHPEFTPQ GVHGYVPAEF ITDDGFYSSS PTKHSLDGAF AARLVRSMH

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.