Factsheet for Os09t0477900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	79.82	82.58
TraesCS5B01G251800.1	Wheat	mitochondrion, plastid	79.65	82.4
TraesCS5D01G260700.1	Wheat	mitochondrion	81.75	81.9
OQU89660	Sorghum	plastid	81.23	80.66
HORVU5Hr1G071070.1	Barley	plastid	80.18	79.34
VIT_19s0015g00650.t01	Wine grape	plastid	60.88	66.1
AT3G13180.1	Thale cress	plastid	58.95	64.24
CDY24205	Canola	plastid	58.6	64.23
CDY43364	Canola	plastid	58.6	63.86
Bra039376.1-P	Field mustard	plastid	58.42	63.67
KRH73916	Soybean	plastid	59.12	63.11
PGSC0003DMT400076617	Potato	cytosol, plastid	60.0	62.07
GSMUA_Achr3P10750_001	Banana	plastid	61.23	61.66
Solyc12g015710.1.1	Tomato	cytosol	60.18	60.82
CDX85924	Canola	cytosol	13.33	58.46
CDY28964	Canola	cytosol	13.68	58.21
Bra022117.1-P	Field mustard	cytosol	17.72	53.72
KRH14216	Soybean	cytosol	25.61	50.34
CDY66223	Canola	mitochondrion	21.4	47.84
Os02t0217800-00	Rice	plastid	14.39	16.24
Os09t0551300-02	Rice	nucleus	19.82	16.17
Os02t0724600-01	Rice	nucleus	19.65	16.16
Os09t0471900-01	Rice	nucleus	13.16	8.52

Protein Annotations

Gene3D:1.10.940.10	Gene3D:3.40.50.150	MapMan:35.2	EntrezGene:4347368	ProteinID:BAD46388.1	ProteinID:BAF25381.1
ProteinID:BAT08612.1	ProteinID:EEE69909.1	InterPro:Fmu/NOL1/Nop2p_CS	GO:GO:0001510	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008173	GO:GO:0008649	GO:GO:0008757
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0031167	GO:GO:0032259	InterPro:IPR001678
InterPro:IPR035926	InterPro:MeTrfase_RsmB/NOP2	InterPro:NusB-like_sf	InterPro:NusB_RsmB_TIM44	EnsemblPlantsGene:Os09g0477900	EnsemblPlants:Os09t0477900-01
PFAM:PF01029	PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02009	ScanProsite:PS01153	PFscan:PS51686
PANTHER:PTHR22807	PANTHER:PTHR22807:SF53	UniProt:Q651X9	InterPro:RCMT	InterPro:RCMT_RsmB-rel_pln	InterPro:SAM-dependent_MTases
SUPFAM:SSF48013	SUPFAM:SSF53335	TIGRFAMs:TIGR00563	UniParc:UPI00003FF4CF	RefSeq:XP_015611691.1	InterPro:rRNA_ssu_MeTfrase_B
SEG:seg	:	:	:	:	:

Description

NusB/RsmB/TIM44 domain containing protein. (Os09t0477900-01)

Coordinates

chr9:+:18293017..18316030

Molecular Weight (calculated)

63334.7 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.174

Length

570 amino acids

Sequence
(BLAST)

001: MEGGALALPH FRSRVGIGSP ILLSADPGAA RRSSGASGRS RVSRVNPGAY PRSAGRGRTW KRDSPEAPPR RSGITRVPNR SPEMPTERAG RTKVSNVNLE
101: VSHHRAVAAV RLLRIEKGKA FVDLLNEKGN SSGENEMSYV ERTLGFSIRC LDNRDIRLVT VIVAGTVRWK RYLDYLIMSL CSEEKVFREM EPLLLQILRI
201: GFFEILKLNV PAYAAVDENV RLAKVALRPG AGNLVNAILR KLLLLKEANS LPLPKIEGDD RAQARALSII YSHPVWMVRR WIRFLGKEEA LKLMKWNNSD
301: PHFSIRVNTA NGYTRADLID RLESLQVHYE KSTMDEFVRI QEGMQTVLQA GLLKEGMCAV QDESAGLVVS VVDPQPGETI IDCCAAPGGK TLFMAARLSG
401: QGKIWALDIN KGRLRILMEA AKLHNLDAMI SDIHADLRLY AKETTATFDK VLLDAPCSGL GVLSKRADLR WNRQFEDLEE LMCLQDELLD SASMLVKPGG
501: ILVYSTCSID PEENEHRIAA FVQRHPDFVL QSVHGYVPAE FVTDEGFYSS SPTKHSIDGA FAARLVRSVL

Best Arabidopsis Sequence Match ( AT3G13180.1 )
(BLAST)

001: MAQLLSFRVY LSAETQKASP GSFKRTQKTR KPFSPDRRGP VAPSRKSQNL NLEVSPHRAV SAVRLMRIEY GGAFADLLNE KGKGSGSNEM SYVERTIGFR
101: TRDLDDRDLR LVTDVVGGTI RWRRYLDHLI GSLCHNERTF RNMEPLLLQI LRIGVYEIIK RDMPPYAVVD ENVRLAKVAL RPGAGDFVNG ILRKLVSLKE
201: KDALPLPKVE GDDRAQARAL ATLHSHPVWM VRRWVKYLGL DEATKLMIWN NNDPGFSLRA NTGRDITRAD LVERLNSLKV PHELSLHLEE FVRIKTGLQT
301: VVQAGLLKEG ICSVQDESAG LIVSVVKPQP GERIMDACAA PGGKTLFMAS CLKGQGMIYA MDVNEGRLRI LGETAKSHQV DGLITTIHSD LRVFAETNEV
401: QYDKVLLDAP CSGLGVLSKR ADLRWNRKLE DMLELTKLQD ELLDSASKLV KHGGVLVYST CSIDPEENEG RVEAFLLRHP EFTIDPVTSF VPSSFVTSQG
501: FFLSNPVKHS LDGAFAARLV RAL

Arabidopsis Description

NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.