Factsheet for TraesCS6A01G286600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G267300.1	Wheat	plastid	97.02	97.78
TraesCS6B01G315600.1	Wheat	plastid	95.99	97.12
HORVU6Hr1G072030.1	Barley	plastid	91.46	93.52
Os09t0551300-02	Rice	nucleus	68.95	76.25
Os02t0724600-01	Rice	nucleus	68.05	75.9
Zm00001d051652_P003	Maize	plasma membrane	67.79	72.98
KXG30856	Sorghum	nucleus, plastid	65.2	72.83
Zm00001d017887_P004	Maize	plastid	67.4	70.98
GSMUA_Achr7P20140_001	Banana	nucleus	49.94	64.44
KRG98455	Soybean	nucleus	46.83	58.39
KRH46413	Soybean	nucleus	46.05	57.98
VIT_19s0015g00840.t01	Wine grape	nucleus	19.28	57.98
VIT_19s0015g00830.t01	Wine grape	nucleus	26.0	55.83
PGSC0003DMT400057532	Potato	nucleus	45.67	55.42
CDX94307	Canola	plastid	45.02	54.63
CDX89321	Canola	plastid	44.37	53.68
Bra026418.1-P	Field mustard	plastid	44.5	53.67
CDY06550	Canola	nucleus	42.43	51.82
Bra035594.1-P	Field mustard	nucleus	42.82	51.72
KRH75188	Soybean	cytosol	20.83	51.44
CDY68035	Canola	nucleus	42.95	51.31
Solyc07g052110.2.1	Tomato	nucleus	46.31	50.71
AT5G55920.1	Thale cress	nucleus	44.24	50.15
CDY28628	Canola	nucleus	42.43	50.08
Bra002867.1-P	Field mustard	mitochondrion, nucleus	42.17	49.47
AT4G26600.5	Thale cress	plastid	44.37	48.86
CDX91690	Canola	cytosol, plastid	12.94	48.78
CDY17367	Canola	mitochondrion, nucleus	42.17	48.73
CDY62126	Canola	cytosol	13.84	46.72
CDY65896	Canola	nucleus	13.71	46.49
CDY17518	Canola	cytosol	12.03	45.37
CDY06532	Canola	cytosol	20.96	43.32
TraesCS5A01G253000.1	Wheat	mitochondrion, plastid	13.58	19.06
TraesCS6A01G183400.2	Wheat	plastid	11.64	17.79
TraesCS4A01G254100.3	Wheat	mitochondrion	13.71	12.74
TraesCS5A01G249700.1	Wheat	cytosol	14.23	12.59

Protein Annotations

MapMan:17.1.2.2.3.6	Gene3D:3.30.70.3130	Gene3D:3.40.50.150	ncoils:Coil	InterPro:Fmu/NOL1/Nop2p_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009987	GO:GO:0016740
InterPro:IPR001678	InterPro:MeTrfase_RsmB/NOP2	InterPro:Methyltr_RsmF_N	InterPro:Nop2p	PFAM:PF01189	PFAM:PF17125
PRINTS:PR02008	PRINTS:PR02012	ScanProsite:PS01153	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF30
InterPro:RCMT	InterPro:RCMT_NOP2	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	TIGRFAMs:TIGR00446	EnsemblPlantsGene:TraesCS6A01G286600
EnsemblPlants:TraesCS6A01G286600.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:518782008..518787494

Molecular Weight (calculated)

85479.4 Da

IEP (calculated)

5.030

GRAVY (calculated)

-0.983

Length

773 amino acids

Sequence
(BLAST)

001: MARKVAQRRP AAPPAPPAAK KVVKVPSRAA KSAAPKKQKL PEPSSDDDSE AEQQPLHEEE EEDSDVDAPS DSDADELSGS DAGSSEEEED DEEEEEEDDD
101: DEEEEDDDPL AGDFLAGSDD DSDEGGDSGE ESDGSDDLEA KSAALDRQKE QIEEDAAADL ALNIRSESDE FRLPTKEELE EEALGPPNLP NLKRRISEIV
201: RVLSNFSKLR QENVARKDYV DQFKTDVMAY YGYNEFLIEA FVEMFPAVEV VELLESFEKR PPECLRTNTL KTRRRDLAAA LIPRGFNLDP IGKWSKVGLV
301: VYDSTVSSGA TVEYMAGHYM KQGASSFLPV MALAPQEKER IVDMAAAPGG KTTYIGALMK NTGIIYANEL NEKRLHGLLG NIHRLGVTNT IVCNYDGKEL
401: PKVLGMNSVD RVLLDAPCTG TGTVWKDAQI KTSKDIDDIR NCAFVQKQLL LAAIDLVDAN SKTGGYIVYS TCSMMIPENE AVIDYALKKR DVKVVPCGLD
501: FGRPGFIRFR EHRFHTSLDK TRRFYPHVNN MDGFFVAKLK KMSNTIPASS ESSKEPEEAA EGVVDPNQDE EDEKDVPDGQ STKSKNHKQG KKKNEQASIP
601: EGEGDQSQAP ERPAKHPKSN KGVKKSSGPK SAEMNGDKKG TRDEQTEHVK SQKGSKKSKG PKNAGMDVDE KETPSEQTEE VKSHKGAKRS SGPKSAGING
701: EKKDVPEEQT EQTSHKKKHV SDKIKKSGSK STSGTKEKKP VSNEGSKKRK RKWQFKLRRD WEAKQKSEKR TKV

Best Arabidopsis Sequence Match ( AT4G26600.1 )
(BLAST)

001: MAALTRNKKK GSNSQTPPLN KQTKASPLKK AAKTQKPPLK KQRKCISEKK PLKKPEVSTD EEEEEEENEQ SDEGSESGSD LFSDGDEEGN NDSDDDDDDD
101: DDDDDDDEDA EPLAEDFLDG SDNEEVTMGS DLDSDSGGSK LERKSRAIDR KRKKEVQDAD DEFKMNIKEK PDEFQLPTQK ELEEEARRPP DLPSLQMRIR
201: EIVRILSNFK DLKPKGDKHE RNDYVGQLKA DLSSYYGYNE FLIGTLIEMF PVVELMELIE AFEKKRPTSI RTNTLKTRRR DLADILLNRG VNLDPLSKWS
301: KVGLIVYDSQ VPIGATPEYL AGFYMLQSAS SFLPVMALAP REKERVVDMA AAPGGKTTYV AALMKNTGII YANEMKVPRL KSLSANLHRM GVTNTIVCNY
401: DGRELTKVLG QSSVDRVLLD APCSGTGVIS KDESVKTSKS ADDIKKFAHL QKQLILGAID LVDANSKTGG YIVYSTCSVM IPENEAVIDY ALKNRDVKLV
501: PCGLDFGRPG FSSFREHRFH PSLEKTRRFY PHVHNMDGFF VAKLKKMSNA MQPSGNDEPA VTMEQAQVSS SDDDDEKAEA IEELEKPPVA SGQPKRESNT
601: KEDTNKRKNP RSKEIHKGKR NKNTKTESGN VEEPRKQKKK RSQWKNEIAQ AREEKRKTMR ENAKETPKHR G

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:TAIR;Acc:AT4G26600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.