Factsheet for PGSC0003DMT400057532

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052110.2.1	Tomato	nucleus	88.7	80.03
KRH46413	Soybean	nucleus	64.21	66.61
VIT_19s0015g00830.t01	Wine grape	nucleus	37.52	66.39
KRG98455	Soybean	nucleus	64.52	66.29
VIT_19s0015g00840.t01	Wine grape	nucleus	26.37	65.37
Bra026418.1-P	Field mustard	plastid	60.75	60.37
CDX91690	Canola	cytosol, plastid	19.0	59.02
CDY62126	Canola	cytosol	20.57	57.21
Bra035594.1-P	Field mustard	nucleus	57.14	56.88
GSMUA_Achr7P20140_001	Banana	nucleus	53.22	56.59
CDY65896	Canola	nucleus	20.09	56.14
Bra002867.1-P	Field mustard	mitochondrion, nucleus	57.93	55.99
KRH75188	Soybean	cytosol	27.47	55.91
AT5G55920.1	Thale cress	nucleus	59.18	55.28
CDY17518	Canola	cytosol	17.43	54.15
AT4G26600.5	Thale cress	plastid	59.5	53.99
CDY06532	Canola	cytosol	29.83	50.8
Os09t0551300-02	Rice	nucleus	55.42	50.5
Os02t0724600-01	Rice	nucleus	54.79	50.36
KXG30856	Sorghum	nucleus, plastid	54.0	49.71
Zm00001d051652_P003	Maize	plasma membrane	54.79	48.61
Zm00001d017887_P004	Maize	plastid	55.57	48.23
HORVU6Hr1G072030.1	Barley	plastid	54.79	46.16
TraesCS6B01G315600.1	Wheat	plastid	55.26	46.07
TraesCS6D01G267300.1	Wheat	plastid	55.42	46.02
TraesCS6A01G286600.1	Wheat	nucleus	55.42	45.67
PGSC0003DMT400076617	Potato	cytosol, plastid	18.21	21.05
PGSC0003DMT400021199	Potato	cytosol, plastid	14.76	19.54
PGSC0003DMT400041672	Potato	nucleus	16.64	12.07

Protein Annotations

EntrezGene:102603613	MapMan:17.1.2.2.3.6	Gene3D:3.30.70.3130	Gene3D:3.40.50.150	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008757	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	InterPro:IPR001678	UniProt:M1C190	InterPro:MeTrfase_RsmB/NOP2	InterPro:Methyltr_RsmF_N	InterPro:Nop2p
PFAM:PF01189	PFAM:PF17125	EnsemblPlantsGene:PGSC0003DMG400022346	PGSC:PGSC0003DMG400022346	EnsemblPlants:PGSC0003DMT400057532	PRINTS:PR02008
PRINTS:PR02012	PFscan:PS51686	PANTHER:PTHR22807	PANTHER:PTHR22807:SF30	InterPro:RCMT	InterPro:RCMT_NOP2
InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	TIGRFAMs:TIGR00446	UniParc:UPI000295F1D2	RefSeq:XP_006347163.1	SEG:seg

Description

Proliferating-cell nucleolar antigen p120 [Source:PGSC_GENE;Acc:PGSC0003DMG400022346]

Coordinates

chr2:-:35119692..35125716

Molecular Weight (calculated)

70969.6 Da

IEP (calculated)

6.031

GRAVY (calculated)

-0.810

Length

637 amino acids

Sequence
(BLAST)

001: MAGPKLGKKS GSKLGKLPAK KKQKKEPLPA KPLEKEELFS DSEGTDGDFQ EDDEQKINSD SEMSSDIDDP FAADILGSGD ADDGSDVNSD SNADSDSDAD
101: DNDLVRKSKA IDDERKREEE DNDLELQLNI KEEADDFRLP TTEELEEETQ RPPDLSNLQR RIKEIVRVLS NLKSLRQEGV TRKDYVDQLK SDLGSYYGYN
201: DFLIESLVEL FPPVELIELI EAFEKPRPIS LRTNTLKSRR RDLAGVLLNR GVNLDPLSKW SKVGLVVYDS QVPVGATPEY MAGHYMLQSA SSFLPVMALA
301: PQENERVVDM AAAPGGKTTY VAALMKNSGI IYANEMKESR LKSLTANLHR MGVTNTIVCN YDGRELPKVL GQNTADRILL DAPCSGTGVI SKDESVKTSK
401: TAPDIQNCSQ LQKELILAAI DMVDANSKSG GYIVYSTCSI MVEENEAVID YALKKRDVKL VPCGLDFGRP GFIRFRQHRF HTSLDKTRRF YPHVHNMDGF
501: FVAKLKKMSN SKSAAKSSVQ SEEVQGTESI ENSDQQDSEE DDDKHSDKKG IANENRKLKE EVAGDKKRKR DVQTHSVKKG AGQNSGATKN GKAENQVVAT
601: KKREKKKPLP REEIAKAREE KRKALREATR KATMKNK

Best Arabidopsis Sequence Match ( AT4G26600.1 )
(BLAST)

001: MAALTRNKKK GSNSQTPPLN KQTKASPLKK AAKTQKPPLK KQRKCISEKK PLKKPEVSTD EEEEEEENEQ SDEGSESGSD LFSDGDEEGN NDSDDDDDDD
101: DDDDDDDEDA EPLAEDFLDG SDNEEVTMGS DLDSDSGGSK LERKSRAIDR KRKKEVQDAD DEFKMNIKEK PDEFQLPTQK ELEEEARRPP DLPSLQMRIR
201: EIVRILSNFK DLKPKGDKHE RNDYVGQLKA DLSSYYGYNE FLIGTLIEMF PVVELMELIE AFEKKRPTSI RTNTLKTRRR DLADILLNRG VNLDPLSKWS
301: KVGLIVYDSQ VPIGATPEYL AGFYMLQSAS SFLPVMALAP REKERVVDMA AAPGGKTTYV AALMKNTGII YANEMKVPRL KSLSANLHRM GVTNTIVCNY
401: DGRELTKVLG QSSVDRVLLD APCSGTGVIS KDESVKTSKS ADDIKKFAHL QKQLILGAID LVDANSKTGG YIVYSTCSVM IPENEAVIDY ALKNRDVKLV
501: PCGLDFGRPG FSSFREHRFH PSLEKTRRFY PHVHNMDGFF VAKLKKMSNA MQPSGNDEPA VTMEQAQVSS SDDDDEKAEA IEELEKPPVA SGQPKRESNT
601: KEDTNKRKNP RSKEIHKGKR NKNTKTESGN VEEPRKQKKK RSQWKNEIAQ AREEKRKTMR ENAKETPKHR G

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:TAIR;Acc:AT4G26600]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.