CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59299	Soybean	cytosol	36.83	94.97
KRH59300	Soybean	mitochondrion	52.8	89.28
KRH31314	Soybean	cytosol	70.73	71.08
CDX89460	Canola	nucleus	58.17	61.0
Bra011816.1-P	Field mustard	cytosol, mitochondrion	52.93	60.78
CDY68255	Canola	cytosol, mitochondrion	52.93	60.78
CDX69365	Canola	cytosol	53.41	60.5
CDY25593	Canola	nucleus	57.93	59.9
Bra030242.1-P	Field mustard	nucleus	57.68	59.65
Bra038528.1-P	Field mustard	nucleus	58.78	59.51
CDY13765	Canola	nucleus	58.78	59.51
CDX76928	Canola	nucleus	58.54	59.48
AT2G22400.1	Thale cress	cytosol	58.17	59.03
AT4G40000.1	Thale cress	nucleus	54.51	57.09
KRG97553	Soybean	extracellular, plasma membrane	28.41	56.69
GSMUA_Achr7P19120_001	Banana	nucleus	56.95	56.13
CDY15291	Canola	nucleus	10.61	56.13
KRH45277	Soybean	cytosol	7.07	52.73
EER96904	Sorghum	nucleus	56.1	52.63
TraesCS5D01G256900.1	Wheat	cytosol	55.98	52.58
TraesCS5B01G247600.1	Wheat	cytosol, mitochondrion	55.85	52.46
TraesCS5A01G249700.1	Wheat	cytosol	55.85	52.4
Os09t0471900-01	Rice	nucleus	55.98	52.16
Zm00001d020810_P002	Maize	nucleus	56.34	51.97
TraesCS4A01G254100.3	Wheat	mitochondrion	49.63	48.92
TraesCS4B01G060400.1	Wheat	mitochondrion, plastid	49.63	48.86
TraesCS4D01G060100.1	Wheat	plastid	49.27	48.73
Zm00001d031265_P029	Maize	mitochondrion	47.56	47.27
KXG25732	Sorghum	mitochondrion	48.29	46.86
KRH14216	Soybean	cytosol	7.07	20.0
KRG98455	Soybean	nucleus	13.41	17.74
KRH52232	Soybean	nucleus	10.37	17.31
KRH46413	Soybean	nucleus	12.93	17.26
KRH61558	Soybean	nucleus	10.24	17.0
KRH73916	Soybean	plastid	9.02	13.86
KRH75188	Soybean	cytosol	4.27	11.18

Protein Annotations

EntrezGene:100808859	MapMan:16.6.7.8	EMBL:ACUP02004847	InterPro:Fmu/NOL1/Nop2p_CS	EnsemblPlantsGene:GLYMA_08G133700	GO:GO:0001510
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016428	GO:GO:0016740
GO:GO:0030488	GO:GO:0032259	UniProt:I1KSZ0	InterPro:IPR001678	EnsemblPlants:KRH43150	ProteinID:KRH43150
ProteinID:KRH43150.1	InterPro:MeTrfase_RsmB/NOP2	PFAM:PF01189	PRINTS:PR02008	PRINTS:PR02011	ScanProsite:PS01153
PFscan:PS51686	PANTHER:PTHR22808	PANTHER:PTHR22808:SF14	MetaCyc:PWY-6825	InterPro:RCMT	InterPro:RCMT_NCL1
InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0002337C87	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:10256938..10263934

Molecular Weight (calculated)

92183.3 Da

IEP (calculated)

6.445

GRAVY (calculated)

-0.452

Length

820 amino acids

Sequence
(BLAST)

001: MGGGGRGGRS RTQRKHFRQS RDNVWKRSKS DPNPSSNENN PPWTPFATEN AAFDFYYKEQ GIVDPQHWDQ FVAVLRTPLP ATFRINSSSQ FSDDLRSQLE
101: NDFLHSLRDE VVEGGETEAI RPLLWYPGNF AWHSNFSRMQ LRKNQTLERF HEFLKLENEI GNITRQEAVS MVPPLFLDVH SDHFVLDMCA APGSKTFQLL
201: EIIHQSSKTR SLPDGMVIAN DLDVQRCNLL IHQTKRMCTA NLIVTNHEAQ HFPGCRLNRN YERMELDNNI SQLLFDRVLC DVPCSGDGTL RKAPDLWRKW
301: NTGMGHGLHS LQVLIAMRGL SLLKIGGRMV YSTCSMNPIE NEAVVAEVLR RCGGSVKLLD VSSELPQLIR RPGLRRWKVY DKGTWLVSYK DVPKYRRSVI
401: LSSMFPSGRG HHDLVDSSCS VDPEGVTNGI NGNAGDGVQA VENPVMSESG AEVCDFPLER CMRIVPHDQN TGAFFIAVLQ KVSPLPAITE QTKIKNDEQY
501: VEPANQSLND AQVPHITSSE SAHEEVFKAV SEENVDDAEP NTEDLEVGPV TCEEQNSKET QEPDNVQNTA KRVPGKRKLQ IQGKWRGVDP VVFFKDETII
601: NSIRDFYGID ERFPFNGHLV TRNSDTNHVK RIYYISKSVK DVLELNFKVG QQLKITSIGL KMFERQTARE GSSASCAFRI SSEGLPLILP YITKQILHAS
701: PADFKHILQN KEVKFEDFND AEFGEKAANL LPGCCVVILH IGNTLAAESL QVDESTIAIG CWKGRARLSV MVTAMDCQEL LERLLIRFDT EKGSSGHADK
801: SSNDVQELNS INDGVKVTVS

Best Arabidopsis Sequence Match ( AT2G22400.1 )
(BLAST)

001: MGRGGRHRGR TQRKDFKESR ENVWKRPKSD ASVDGSDNAV PEQKPTWEPI VTVNPNFEEY YKKQGIVKAE EWDLFMEILR KPLPAAFRVN SNGQFCDEII
101: SILENDFMKS LQAEAIEGGE LEAIKPLPWY PKNLAWHSNF SRKEIRKNQT LERFHEFLKL ENEVGNITRQ EAVSMVPPLF LDVHPDHFVL DMCAAPGSKT
201: FQLLEIIHEA SEPGSLPNGL VVANDVDFKR SNLLIHQTKR MCTSNLIVTN HEGQQFPGCR LNKSRASEKG ISENMPINQL AFDRVLCDVP CSGDGTLRKA
301: PDIWRKWNSG MGNGLHSLQI ILAMRGLSLL KVGGKMIYST CSMNPVEDEA VVAEILRRCG DSVELLDVSD KLPELIRRPG LKAWKVRDKG GWFTSYKDVP
401: QNRRGGVLVS MFPSGKYLKD STETTEKNEN GDVNGCEDGL KETDISVVDA TPEEQAEEVS DLPLERCMRI IPHDQNTGAF FIAVLQKKSP LPEFQEKPNT
501: KRNSTAKSTD STEKSPSKES VVTVDAGVPD ESAVEKVIEA DSNIEKNDSL EPEKKITEGE SITEDKEANS SNAGGKRKVP MQGKWKGFDP VVFVKDETVI
601: NGIKEFYGIK DESFPLHGHL VARNTDTSSV KRIYYVSKSV KEVLQLNFAV GQQLKIASVG LKMFERQSAK EGSSTLCPFR ISSEGLPVIL PYITKQVLYT
701: PMADFKLLLQ DKSIKFHDFV NPQLAQKATD LVMGSCVVIL SDGEVPVKAD ASTIAISCWR GKASLAVMAT VADCQELLER FAEKTPKTEG GSVNGSNGDS
801: DGPLAMET

Arabidopsis Description

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L601]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.