Factsheet for Bra012806.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000090.1-P
Bra001009.1-P
Bra001422.1-P
Bra001663.1-P
Bra001716.1-P
Bra005361.1-P
Bra005749.1-P
Bra006289.1-P
Bra008713.1-P
Bra009560.1-P
Bra010436.1-P
Bra010455.1-P
Bra010982.1-P
Bra011119.1-P
Bra011260.1-P
Bra012490.1-P
Bra012620.1-P
Bra013905.1-P
Bra014333.1-P
Bra015345.1-P
Bra017103.1-P
Bra017331.1-P
Bra019148.1-P
Bra021248.1-P
Bra021478.1-P
Bra022216.1-P
Bra022345.1-P
Bra023003.1-P
Bra023227.1-P
Bra023511.1-P
Bra024012.1-P
Bra024215.1-P
Bra024481.1-P
Bra024770.1-P
Bra026272.1-P
Bra026455.1-P
Bra029785.1-P
Bra030588.1-P
Bra030816.1-P
Bra031096.1-P
Bra032493.1-P
Bra032828.1-P
Bra033171.1-P
Bra034085.1-P
Bra034808.1-P
Bra035518.1-P
Bra037242.1-P
Bra037569.1-P
Bra037917.1-P
Bra038695.1-P
Bra039130.1-P
Bra039150.1-P
Bra039911.1-P
Bra040115.1-P
Bra040415.1-P
Bra040785.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52400.1	Bra015345.1-P	AT1G04750.1	24556609
AT3G52400.1	Bra030588.1-P	AT1G04750.1	24556609
AT3G52400.1	Bra032493.1-P	AT1G04750.1	24556609
AT3G52400.1	Bra010982.1-P	AT1G25260.1	24556609
AT3G52400.1	Bra012490.1-P	AT1G25260.1	24556609
AT3G52400.1	Bra024770.1-P	AT1G25260.1	24556609
AT3G52400.1	Bra032828.1-P	AT1G27400.1	24556609
AT3G52400.1	Bra023227.1-P	AT1G31970.1	24556609
AT3G52400.1	Bra035518.1-P	AT1G31970.1	24556609
AT3G52400.1	Bra030816.1-P	AT1G56110.1	24556609
AT3G52400.1	Bra040785.1-P	AT1G56110.1	24556609
AT3G52400.1	Bra024481.1-P	AT2G18020.1	24556609
AT3G52400.1	Bra037242.1-P	AT2G18020.1	24556609
AT3G52400.1	Bra039911.1-P	AT2G18020.1	24556609
AT3G52400.1	Bra031096.1-P	AT2G19750.1	24556609
AT3G52400.1	Bra005361.1-P	AT2G35190.1	24556609
AT3G52400.1	Bra017331.1-P	AT2G35190.1	24556609
AT3G52400.1	Bra023003.1-P	AT2G35190.1	24556609
AT3G52400.1	Bra000090.1-P	AT2G38750.1	24556609
AT3G52400.1	Bra017103.1-P	AT2G38750.1	24556609
AT3G52400.1	Bra001009.1-P	AT3G01290.1	24556609
AT3G52400.1	Bra039130.1-P	AT3G01290.1	24556609
AT3G52400.1	Bra021478.1-P	AT3G02080.1	24556609
AT3G52400.1	Bra039150.1-P	AT3G02080.1	24556609
AT3G52400.1	Bra040115.1-P	AT3G04920.1	24556609
AT3G52400.1	Bra040415.1-P	AT3G04920.1	24556609
AT3G52400.1	Bra014333.1-P	AT3G09740.1	24556609
AT3G52400.1	Bra029785.1-P	AT3G09740.1	24556609
AT3G52400.1	Bra034085.1-P	AT3G09740.1	24556609
AT3G52400.1	Bra001422.1-P	AT3G11820.1	24556609
AT3G52400.1	Bra034808.1-P	AT3G11820.1	24556609
AT3G52400.1	Bra038695.1-P	AT3G12030.1	24556609
AT3G52400.1	Bra001663.1-P	AT3G17440.1	24556609
AT3G52400.1	Bra021248.1-P	AT3G17440.1	24556609
AT3G52400.1	Bra022216.1-P	AT3G17440.1	24556609
AT3G52400.1	Bra001716.1-P	AT3G18690.1	24556609
AT3G52400.1	Bra022345.1-P	AT3G18690.1	24556609
AT3G52400.1	Bra037569.1-P	AT3G18690.1	24556609
AT3G52400.1	Bra033171.1-P	AT4G10450.1	24556609
AT3G52400.1	Bra037917.1-P	AT4G10450.1	24556609
AT3G52400.1	Bra012620.1-P	AT4G18060.1	24556609
AT3G52400.1	Bra010436.1-P	AT4G26230.1	24556609
AT3G52400.1	Bra026455.1-P	AT4G26230.1	24556609
AT3G52400.1	Bra024215.1-P	AT4G28250.1	24556609
AT3G52400.1	Bra026272.1-P	AT4G28250.1	24556609
AT3G52400.1	Bra011119.1-P	AT4G29520.1	24556609
AT3G52400.1	Bra011260.1-P	AT4G31340.1	24556609
AT3G52400.1	Bra024012.1-P	AT4G31340.1	24556609
AT3G52400.1	Bra005749.1-P	AT5G02870.1	24556609
AT3G52400.1	Bra009560.1-P	AT5G02870.1	24556609
AT3G52400.1	Bra006289.1-P	AT5G15200.1	24556609
AT3G52400.1	Bra008713.1-P	AT5G15200.1	24556609
AT3G52400.1	Bra023511.1-P	AT5G15200.1	24556609
AT3G52400.1	Bra010455.1-P	AT5G52470.1	24556609
AT3G52400.1	Bra013905.1-P	AT5G52470.1	24556609
AT3G52400.1	Bra019148.1-P	AT5G52470.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90604	Canola	cytosol, golgi, nucleus	99.03	91.32
CDY29079	Canola	cytosol, golgi, nucleus	97.4	89.29
Bra033436.1-P	Field mustard	cytosol	87.99	79.24
AT3G52400.1	Thale cress	cytosol	78.57	70.97
Bra001422.1-P	Field mustard	cytosol	67.21	62.16
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	62.66	59.38
KRH32861	Soybean	mitochondrion	62.66	58.13
PGSC0003DMT400054965	Potato	cytosol	56.17	57.67
Solyc01g006950.2.1	Tomato	nucleus	55.84	57.33
KRH72169	Soybean	cytosol	62.34	57.31
VIT_08s0032g01150.t01	Wine grape	cytosol	59.74	56.79
Solyc10g081850.1.1	Tomato	cytosol	55.19	56.11
PGSC0003DMT400072325	Potato	cytosol	54.55	55.63
Bra031761.1-P	Field mustard	cytosol	28.9	53.94
GSMUA_Achr6P31140_001	Banana	cytosol	47.4	53.28
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	17.21	50.96
Bra019872.1-P	Field mustard	cytosol	47.73	49.33
Bra031759.1-P	Field mustard	cytosol	47.4	48.99
Bra016846.1-P	Field mustard	cytosol	47.4	48.99
GSMUA_Achr8P03020_001	Banana	cytosol	47.73	47.27
EER93336	Sorghum	cytosol	46.43	46.58
Zm00001d034365_P001	Maize	plasma membrane	46.1	46.41
Os03t0787000-01	Rice	plasma membrane	49.68	46.36
TraesCS5A01G425600.1	Wheat	cytosol, nucleus, plastid	47.4	46.06
TraesCS5B01G427600.1	Wheat	cytosol, golgi, nucleus	47.08	45.31
Bra034202.1-P	Field mustard	cytosol	44.48	44.92
TraesCSU01G076400.1	Wheat	cytosol, golgi, nucleus	46.75	44.86
Bra009318.1-P	Field mustard	cytosol	42.86	43.56
HORVU5Hr1G103590.1	Barley	cytosol, mitochondrion	35.71	43.14
Bra005968.1-P	Field mustard	cytosol	41.88	42.43
Bra028672.1-P	Field mustard	cytosol	41.56	42.24
Bra031972.1-P	Field mustard	cytosol	37.34	41.07
Bra036431.1-P	Field mustard	cytosol	36.36	40.29
Bra030733.1-P	Field mustard	cytosol	34.74	35.2
Bra018615.1-P	Field mustard	cytosol	34.74	34.85
Zm00001d013114_P001	Maize	cytosol, plastid	31.49	33.22
Bra024476.1-P	Field mustard	cytosol	27.92	30.07
Bra039622.1-P	Field mustard	cytosol	27.6	29.51
Zm00001d013115_P001	Maize	cytosol	13.96	29.45
HORVU5Hr1G103620.1	Barley	cytosol	10.39	20.65

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EnsemblPlantsGene:Bra012806	EnsemblPlants:Bra012806.1	EnsemblPlants:Bra012806.1-P
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M4D8J6
PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF69
SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000254076E	SEG:seg	:	:

Description

AT3G52400 (E=4e-124) SYP122, ATSYP122 | SYP122 (SYNTAXIN OF PLANTS 122); SNAP receptor

Coordinates

chrA03:-:22128815..22130105

Molecular Weight (calculated)

34880.5 Da

IEP (calculated)

9.008

GRAVY (calculated)

-0.653

Length

308 amino acids

Sequence
(BLAST)

001: MPKAKYSGGN NLDKFFLDVE EVNSDLKELD RLCHSLQVSH DKSKTLHNAK EVKELKDKMD SDVSKALKTA KRVKGNLQAL DRSNEVNRSL PESGPGSSSD
101: RQRMAVVNGL RKKLKDAMDH FMRVRETIST DYRDTIHRLY FTVTGENPDE DTVDHLISTG ESETFLQKAI QEQGRGRILD TINEIQERHD AVKDIEKSLN
201: ELHQVFLDMA VLVQSQGEQL DTIEDSLKRT NTIIRSGADQ LVKARFYQKN TRKWTCYAVL ILIIIVVLVV LFTVKPWENN NGGGGGSNRQ ATPVQAQPPP
301: SQARRLLR

Best Arabidopsis Sequence Match ( AT3G52400.1 )
(BLAST)

001: MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R

Arabidopsis Description

SYP122Syntaxin-122 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.