Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g006950.2.1 | Tomato | nucleus | 98.0 | 98.0 |
| PGSC0003DMT400072325 | Potato | cytosol | 86.0 | 85.43 |
| KRH72168 | Soybean | cytosol | 72.33 | 71.15 |
| KRH32862 | Soybean | cytosol | 71.0 | 69.61 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 71.0 | 65.74 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 60.0 | 65.69 |
| KRH32861 | Soybean | mitochondrion | 72.67 | 65.66 |
| KRH72169 | Soybean | cytosol | 72.67 | 65.07 |
| CDY70958 | Canola | cytosol | 71.0 | 63.96 |
| Bra001422.1-P | Field mustard | cytosol | 71.0 | 63.96 |
| CDX73851 | Canola | cytosol | 71.0 | 63.77 |
| CDY01061 | Canola | cytosol, plastid | 70.67 | 63.28 |
| CDY08492 | Canola | cytosol | 70.0 | 61.95 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 71.33 | 61.85 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 66.67 | 61.54 |
| EER93336 | Sorghum | cytosol | 61.33 | 59.93 |
| Zm00001d034365_P001 | Maize | plasma membrane | 59.33 | 58.17 |
| Bra033436.1-P | Field mustard | cytosol | 65.67 | 57.6 |
| CDY23212 | Canola | cytosol | 65.67 | 57.43 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 59.33 | 57.23 |
| KRH68016 | Soybean | cytosol | 56.0 | 57.14 |
| AT3G52400.1 | Thale cress | cytosol | 64.67 | 56.89 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 56.67 | 56.48 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 57.67 | 56.17 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 59.33 | 56.15 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 62.33 | 55.99 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 62.33 | 55.65 |
| PGSC0003DMT400035739 | Potato | cytosol | 57.33 | 55.48 |
| Os03t0787000-01 | Rice | plasma membrane | 61.0 | 55.45 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 59.0 | 55.31 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 59.0 | 55.14 |
| PGSC0003DMT400055777 | Potato | cytosol | 56.67 | 54.66 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 42.67 | 50.2 |
| PGSC0003DMT400041982 | Potato | cytosol | 49.33 | 47.59 |
| Zm00001d013115_P001 | Maize | cytosol | 22.67 | 46.58 |
| PGSC0003DMT400072284 | Potato | cytosol | 47.33 | 45.81 |
| PGSC0003DMT400065519 | Potato | cytosol | 45.67 | 43.91 |
| CDX95336 | Canola | cytosol | 15.0 | 42.86 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 40.67 | 41.78 |
| PGSC0003DMT400001933 | Potato | cytosol | 38.0 | 38.91 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 38.67 | 38.8 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 16.67 | 32.26 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:102600579 | MapMan:22.7.1.1 | ProteinID:AAU04512 | ProteinID:AAU04512.1 |
| EMBL:AY616763 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| InterPro:IPR000727 | UniProt:M1BX47 | PFAM:PF00804 | PFAM:PF05739 | EnsemblPlantsGene:PGSC0003DMG400021331 | PGSC:PGSC0003DMG400021331 |
| EnsemblPlants:PGSC0003DMT400054965 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000294E556 | RefSeq:XP_006348450.1 | SEG:seg | : | : |
Description
PEN1 [Source:PGSC_GENE;Acc:PGSC0003DMG400021331]
Coordinates
chr1:-:2807645..2809862
Molecular Weight (calculated)
34236.7 Da
IEP (calculated)
6.731
GRAVY (calculated)
-0.668
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSGSFS RHGENDHDQD SHGIEMGDTG GVNLDKFFED VEAIKDELKN LEKIYAQLQS SNEKSKTLHN AKAVKDLRSK MDDDVSLALK KAKFIKVRLE
101: ALDRSNASNR SLPECGPGSS SDRTRTSVVN GLRKKLHESM NQFNELRQKM ASEYRETVQR RYYTVTGENP DETVLDTLIS TGQSETFLQK AIQEQGRGQV
201: MDTIMEIQER HEAVKEIERN LKELHQVFLD MAVLVESQGE QLDDIESQVN RANSYVRGGA QQLQVARKHQ KNTRKWTCFA IILLLIIILI VVLSIQPWKK
101: ALDRSNASNR SLPECGPGSS SDRTRTSVVN GLRKKLHESM NQFNELRQKM ASEYRETVQR RYYTVTGENP DETVLDTLIS TGQSETFLQK AIQEQGRGQV
201: MDTIMEIQER HEAVKEIERN LKELHQVFLD MAVLVESQGE QLDDIESQVN RANSYVRGGA QQLQVARKHQ KNTRKWTCFA IILLLIIILI VVLSIQPWKK
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.