Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035739 | Potato | cytosol | 83.28 | 83.55 |
| KRH10761 | Soybean | cytosol | 75.24 | 76.97 |
| KRH21567 | Soybean | cytosol | 74.6 | 76.32 |
| Bra031761.1-P | Field mustard | cytosol | 40.19 | 75.76 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 74.6 | 75.32 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 25.08 | 75.0 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 72.35 | 73.77 |
| KRH41917 | Soybean | cytosol | 72.03 | 73.68 |
| AT1G61290.2 | Thale cress | cytosol | 71.38 | 73.27 |
| AT1G11250.1 | Thale cress | cytosol | 69.77 | 72.82 |
| CDY20986 | Canola | cytosol | 69.45 | 72.48 |
| Bra019872.1-P | Field mustard | cytosol | 69.13 | 72.15 |
| CDX97943 | Canola | cytosol | 69.13 | 72.15 |
| CDY19350 | Canola | cytosol | 69.13 | 72.15 |
| CDY34843 | Canola | cytosol | 68.81 | 71.81 |
| CDY70107 | Canola | cytosol | 68.81 | 71.81 |
| Bra016846.1-P | Field mustard | cytosol | 68.81 | 71.81 |
| CDY34656 | Canola | cytosol | 68.49 | 71.48 |
| Bra031759.1-P | Field mustard | cytosol | 68.17 | 71.14 |
| Zm00001d046482_P001 | Maize | cytosol | 66.88 | 67.31 |
| Zm00001d036931_P001 | Maize | cytosol | 66.24 | 66.67 |
| EER89986 | Sorghum | cytosol | 66.24 | 66.67 |
| GSMUA_Achr10P... | Banana | cytosol | 58.84 | 65.59 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 53.38 | 65.35 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 63.67 | 64.71 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 63.02 | 64.05 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 63.02 | 64.05 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 62.7 | 63.93 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 62.38 | 63.61 |
| Os02t0209900-01 | Rice | cytosol | 62.7 | 62.7 |
| EES06503 | Sorghum | cytosol | 62.7 | 61.9 |
| Zm00001d053607_P001 | Maize | cytosol | 61.09 | 60.7 |
| PGSC0003DMT400054965 | Potato | cytosol | 54.66 | 56.67 |
| PGSC0003DMT400072325 | Potato | cytosol | 54.66 | 56.29 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 62.7 | 51.59 |
| PGSC0003DMT400041982 | Potato | cytosol | 47.27 | 47.27 |
| PGSC0003DMT400072284 | Potato | cytosol | 43.41 | 43.55 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 38.91 | 40.47 |
| PGSC0003DMT400065519 | Potato | cytosol | 39.55 | 39.42 |
| PGSC0003DMT400001933 | Potato | cytosol | 34.41 | 36.52 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 34.41 | 33.97 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 34.41 | 33.97 |
Protein Annotations
| Gene3D:1.20.58.70 | EntrezGene:102602482 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | UniProt:M1BYI2 | PFAM:PF00804 | PFAM:PF05739 |
| EnsemblPlantsGene:PGSC0003DMG401021662 | PGSC:PGSC0003DMG401021662 | EnsemblPlants:PGSC0003DMT400055777 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002954AEA | RefSeq:XP_006366031.1 | SEG:seg |
Description
SYP124 [Source:PGSC_GENE;Acc:PGSC0003DMG401021662]
Coordinates
chr10:-:4116283..4117664
Molecular Weight (calculated)
35035.0 Da
IEP (calculated)
5.750
GRAVY (calculated)
-0.456
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSPSLK KYQDLKQQIQ MDDLELGTGG TGPSQNESID LAKFFEDVEN VKEDMKEVEN LHKRLQESNE ESKTVHSAQK VKDIRARMDS DVTLVLKRVK
101: IIKGKLEGLE RSNVANRKNM GCGPGSSADR TRTSVVSGLG KKLKVLMDDF QALRAKMNSE YKDTVARRYF TVTGENADDE LIDNLISSGE SESFLQKAIQ
201: EQGRGQIMDT ISEIQERHDA VKEIEKNLIE LHQIFLDMAA LVEAQGQQLN DIESHVAHAS SFVRRGTEQL TEARELQKSS RKCTCIAILL IILLIIVLTF
301: PLWSPLITSR L
101: IIKGKLEGLE RSNVANRKNM GCGPGSSADR TRTSVVSGLG KKLKVLMDDF QALRAKMNSE YKDTVARRYF TVTGENADDE LIDNLISSGE SESFLQKAIQ
201: EQGRGQIMDT ISEIQERHDA VKEIEKNLIE LHQIFLDMAA LVEAQGQQLN DIESHVAHAS SFVRRGTEQL TEARELQKSS RKCTCIAILL IILLIIVLTF
301: PLWSPLITSR L
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.