Factsheet for Bra019872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97943	Canola	cytosol	100.0	100.0
Bra031760.1-P	Field mustard	cytosol, nucleus, plasma membrane	33.89	97.12
Bra016846.1-P	Field mustard	cytosol	96.98	96.98
Bra031761.1-P	Field mustard	cytosol	53.02	95.76
AT1G11250.1	Thale cress	cytosol	94.97	94.97
Bra031759.1-P	Field mustard	cytosol	94.97	94.97
KRH10761	Soybean	cytosol	78.19	76.64
KRH21567	Soybean	cytosol	77.52	75.99
KRH41917	Soybean	cytosol	77.52	75.99
VIT_12s0059g02060.t01	Wine grape	cytosol	75.5	73.77
PGSC0003DMT400035739	Potato	cytosol	73.49	70.65
Solyc12g005580.1.1	Tomato	cytosol	73.15	70.32
PGSC0003DMT400055777	Potato	cytosol	72.15	69.13
Bra034202.1-P	Field mustard	cytosol	67.79	66.23
Zm00001d036931_P001	Maize	cytosol	68.46	66.02
Zm00001d046482_P001	Maize	cytosol	68.12	65.7
EER89986	Sorghum	cytosol	67.79	65.37
GSMUA_Achr6P04820_001	Banana	cytosol	55.7	65.35
GSMUA_Achr10P...	Banana	cytosol	60.74	64.87
TraesCS6B01G211000.1	Wheat	cytosol	65.44	63.93
TraesCS7B01G260100.1	Wheat	cytosol	65.44	63.73
TraesCS6D01G169800.1	Wheat	cytosol	65.1	63.61
TraesCS7A01G368400.1	Wheat	cytosol	64.43	62.75
Os02t0209900-01	Rice	cytosol	65.1	62.38
TraesCS7D01G354500.1	Wheat	cytosol	63.76	62.09
EES06503	Sorghum	cytosol	63.42	60.0
Zm00001d053607_P001	Maize	cytosol	62.08	59.11
Bra001422.1-P	Field mustard	cytosol	60.07	53.75
TraesCS6A01G182200.1	Wheat	cytosol	65.77	51.85
Bra034808.1-P	Field mustard	cytosol, nucleus, plastid	56.04	51.38
Bra033436.1-P	Field mustard	cytosol	55.7	48.54
Bra012806.1-P	Field mustard	cytosol, nucleus, peroxisome	49.33	47.73
Bra028672.1-P	Field mustard	cytosol	46.98	46.2
Bra005968.1-P	Field mustard	cytosol	46.98	46.05
Bra009318.1-P	Field mustard	cytosol	46.64	45.87
Bra030733.1-P	Field mustard	cytosol	43.29	42.43
Bra018615.1-P	Field mustard	cytosol	43.29	42.02
Bra036431.1-P	Field mustard	cytosol	38.59	41.37
Bra031972.1-P	Field mustard	cytosol	38.59	41.07
Bra024476.1-P	Field mustard	cytosol	33.56	34.97
Bra039622.1-P	Field mustard	cytosol	33.56	34.72
HORVU7Hr1G085550.1	Barley	cytosol	36.58	34.6
HORVU6Hr1G038490.4	Barley	nucleus	35.91	33.97

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EnsemblPlantsGene:Bra019872	EnsemblPlants:Bra019872.1	EnsemblPlants:Bra019872.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727
UniProt:M4DTM9	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF198	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253EB0D	SEG:seg	:

Description

AT1G11250 (E=1e-143) SYP125, ATSYP125 | SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor

Coordinates

chrA06:+:3931870..3932839

Molecular Weight (calculated)

33970.7 Da

IEP (calculated)

6.087

GRAVY (calculated)

-0.548

Length

298 amino acids

Sequence
(BLAST)

001: MNDLFSNSFK RNQAQMSDVE AGQETMNLDK FFEDVENVKD DMKGVETLYK KLQDSNEECQ TVHNAKKVKE LRAKMDADVG QVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQSL RARMNDEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGEIMDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV VFILLLIPVM PHIMLMLK

Best Arabidopsis Sequence Match ( AT1G11250.1 )
(BLAST)

001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK

Arabidopsis Description

SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.