Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G169800.1 | Wheat | cytosol | 78.46 | 80.0 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 78.46 | 80.0 |
| Zm00001d053607_P001 | Maize | cytosol | 78.14 | 77.64 |
| EES06503 | Sorghum | cytosol | 76.85 | 75.87 |
| GSMUA_Achr10P... | Banana | cytosol | 63.99 | 71.33 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 57.56 | 70.47 |
| Bra031761.1-P | Field mustard | cytosol | 36.66 | 69.09 |
| KRH10761 | Soybean | cytosol | 66.56 | 68.09 |
| KRH21567 | Soybean | cytosol | 66.56 | 68.09 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 66.88 | 67.53 |
| AT1G11250.1 | Thale cress | cytosol | 63.99 | 66.78 |
| KRH41917 | Soybean | cytosol | 65.27 | 66.78 |
| AT1G61290.2 | Thale cress | cytosol | 64.95 | 66.67 |
| CDY34843 | Canola | cytosol | 63.02 | 65.77 |
| CDY34656 | Canola | cytosol | 63.02 | 65.77 |
| Bra031759.1-P | Field mustard | cytosol | 62.7 | 65.44 |
| CDY20986 | Canola | cytosol | 62.7 | 65.44 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 21.86 | 65.38 |
| CDX97943 | Canola | cytosol | 62.38 | 65.1 |
| CDY19350 | Canola | cytosol | 62.38 | 65.1 |
| Bra019872.1-P | Field mustard | cytosol | 62.38 | 65.1 |
| Bra016846.1-P | Field mustard | cytosol | 62.06 | 64.77 |
| CDY70107 | Canola | cytosol | 61.74 | 64.43 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 77.81 | 64.02 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 62.7 | 63.93 |
| Solyc12g005580.1.1 | Tomato | cytosol | 63.34 | 63.55 |
| PGSC0003DMT400035739 | Potato | cytosol | 63.34 | 63.55 |
| AT4G03330.1 | Thale cress | cytosol | 61.74 | 62.95 |
| PGSC0003DMT400055777 | Potato | cytosol | 62.7 | 62.7 |
| CDY48554 | Canola | cytosol | 61.41 | 62.62 |
| Bra034202.1-P | Field mustard | cytosol | 61.41 | 62.62 |
| CDY21958 | Canola | cytosol | 61.41 | 62.62 |
| Os03t0787000-01 | Rice | plasma membrane | 54.34 | 51.21 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 49.52 | 49.52 |
| Os07t0528900-00 | Rice | cytosol, extracellular, plasma membrane | 16.08 | 45.05 |
| Os06t0168500-01 | Rice | plasma membrane | 41.8 | 42.62 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 41.8 | 41.27 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 37.62 | 37.14 |
| Os12t0192300-00 | Rice | plasma membrane | 30.55 | 27.3 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:9272269 | ProteinID:BAD25019.1 | ProteinID:BAH91581.1 | ProteinID:BAS77589.1 |
| ProteinID:EAZ22194.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 |
| GO:GO:0061025 | InterPro:IPR000727 | EnsemblPlantsGene:Os02g0209900 | EnsemblPlants:Os02t0209900-01 | PFAM:PF00804 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF80 | UniProt:Q6H8D0 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI00003B430A | RefSeq:XP_015624037.1 | SEG:seg | : | : |
Description
Syntaxin, N-terminal domain containing protein. (Os02t0209900-01)
Coordinates
chr2:-:6158238..6159991
Molecular Weight (calculated)
34113.6 Da
IEP (calculated)
6.736
GRAVY (calculated)
-0.389
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSGSF KKYADLKNQA ALDDMESGGG GGGGGEGANL EQFFEEVEGV KGEMRGLEAL HGRLQASHEG SKTAHDARAV RSLRARMDAD VEQVLRRARA
101: VKGRLQALDR ANAASRKLPG RGPGSSTDRT RSSIVSGLGT KLKDLMDDFQ GLRSRMAEEY KETVARRYYT VTGEKAEEST VEALISSGES ETFLQKAIQE
201: QGRGQVLDTI SEIQERHDAV KEIERGLLDL HQVFLDMAAL VEAQGHQLND IESHVARANS FVRRGAVELE TAREYQRSSR KWACIAILAG VVLVVIIVLP
301: IIVNLHLLTI R
101: VKGRLQALDR ANAASRKLPG RGPGSSTDRT RSSIVSGLGT KLKDLMDDFQ GLRSRMAEEY KETVARRYYT VTGEKAEEST VEALISSGES ETFLQKAIQE
201: QGRGQVLDTI SEIQERHDAV KEIERGLLDL HQVFLDMAAL VEAQGHQLND IESHVARANS FVRRGAVELE TAREYQRSSR KWACIAILAG VVLVVIIVLP
301: IIVNLHLLTI R
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.