Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 33.56 | 96.15 |
| CDY20986 | Canola | cytosol | 95.97 | 95.97 |
| Bra031761.1-P | Field mustard | cytosol | 53.02 | 95.76 |
| CDY34656 | Canola | cytosol | 95.64 | 95.64 |
| CDY34843 | Canola | cytosol | 95.3 | 95.3 |
| Bra016846.1-P | Field mustard | cytosol | 95.3 | 95.3 |
| CDY70107 | Canola | cytosol | 94.97 | 94.97 |
| CDY19350 | Canola | cytosol | 94.97 | 94.97 |
| CDX97943 | Canola | cytosol | 94.97 | 94.97 |
| Bra019872.1-P | Field mustard | cytosol | 94.97 | 94.97 |
| Bra031759.1-P | Field mustard | cytosol | 94.63 | 94.63 |
| AT1G61290.2 | Thale cress | cytosol | 91.28 | 89.77 |
| KRH10761 | Soybean | cytosol | 79.87 | 78.29 |
| KRH21567 | Soybean | cytosol | 79.19 | 77.63 |
| KRH41917 | Soybean | cytosol | 78.86 | 77.3 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 75.84 | 74.1 |
| PGSC0003DMT400035739 | Potato | cytosol | 73.83 | 70.97 |
| Solyc12g005580.1.1 | Tomato | cytosol | 73.83 | 70.97 |
| PGSC0003DMT400055777 | Potato | cytosol | 72.82 | 69.77 |
| Zm00001d036931_P001 | Maize | cytosol | 68.79 | 66.34 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 56.38 | 66.14 |
| Zm00001d046482_P001 | Maize | cytosol | 68.46 | 66.02 |
| GSMUA_Achr10P... | Banana | cytosol | 61.74 | 65.95 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 67.45 | 65.9 |
| EER89986 | Sorghum | cytosol | 68.12 | 65.7 |
| AT4G03330.1 | Thale cress | cytosol | 67.11 | 65.57 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 67.11 | 65.57 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 65.77 | 64.05 |
| Os02t0209900-01 | Rice | cytosol | 66.78 | 63.99 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 64.77 | 63.07 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 64.09 | 62.42 |
| Zm00001d053607_P001 | Maize | cytosol | 63.42 | 60.38 |
| EES06503 | Sorghum | cytosol | 63.76 | 60.32 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 62.08 | 53.47 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 67.45 | 53.17 |
| AT3G52400.1 | Thale cress | cytosol | 55.7 | 48.68 |
| AT1G08560.1 | Thale cress | cytosol | 45.64 | 43.87 |
| AT5G08080.3 | Thale cress | cytosol | 46.31 | 43.81 |
| AT3G03800.1 | Thale cress | cytosol | 44.63 | 43.46 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 37.25 | 35.24 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 36.58 | 34.6 |
| AT2G18260.1 | Thale cress | cytosol | 34.9 | 34.1 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:837666 | UniProt:A0A178W554 | ProteinID:AAD50004.1 |
| ProteinID:AEE28704.1 | ArrayExpress:AT1G11250 | EnsemblPlantsGene:AT1G11250 | RefSeq:AT1G11250 | TAIR:AT1G11250 | RefSeq:AT1G11250-TAIR-G |
| EnsemblPlants:AT1G11250.1 | TAIR:AT1G11250.1 | ncoils:Coil | EMBL:DQ056451 | GO:GO:0000149 | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 |
| RefSeq:NP_172591.1 | ProteinID:OAP12493.1 | PFAM:PF00804 | PFAM:PF05739 | PO:PO:0000036 | PO:PO:0000056 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0005660 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020141 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF198 | UniProt:Q9SXB0 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | Symbol:SYP125 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0000135424 | SEG:seg | : | : |
Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
Coordinates
chr1:+:3768521..3770102
Molecular Weight (calculated)
33827.7 Da
IEP (calculated)
7.051
GRAVY (calculated)
-0.499
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.