Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46302 | Canola | cytosol | 82.3 | 87.15 |
| Bra039622.1-P | Field mustard | cytosol | 82.3 | 87.15 |
| CDY25157 | Canola | cytosol | 56.72 | 85.64 |
| CDY29223 | Canola | cytosol | 77.7 | 82.58 |
| CDY20921 | Canola | cytosol | 77.38 | 82.52 |
| Bra024476.1-P | Field mustard | cytosol | 77.05 | 82.17 |
| VIT_04s0043g00820.t01 | Wine grape | cytosol | 60.66 | 61.87 |
| KRH76768 | Soybean | cytosol | 60.66 | 61.87 |
| VIT_04s0023g01980.t01 | Wine grape | cytosol | 60.33 | 61.54 |
| KRH28699 | Soybean | cytosol | 58.69 | 59.87 |
| Solyc02g085090.1.1 | Tomato | cytosol | 58.69 | 59.87 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 58.03 | 59.2 |
| GSMUA_Achr10P... | Banana | cytosol | 43.28 | 48.53 |
| KRH59335 | Soybean | cytosol | 23.61 | 47.37 |
| KRH43180 | Soybean | cytosol | 36.72 | 43.58 |
| AT1G61290.2 | Thale cress | cytosol | 36.07 | 36.3 |
| AT1G08560.1 | Thale cress | cytosol | 36.72 | 36.13 |
| AT4G03330.1 | Thale cress | cytosol | 36.07 | 36.07 |
| AT1G11250.1 | Thale cress | cytosol | 34.1 | 34.9 |
| AT3G03800.1 | Thale cress | cytosol | 32.79 | 32.68 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 36.72 | 32.37 |
| AT3G52400.1 | Thale cress | cytosol | 34.43 | 30.79 |
| AT5G08080.3 | Thale cress | cytosol | 31.48 | 30.48 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:816342 | UniProt:A0A178VPA2 | ProteinID:AAD15510.1 | ProteinID:AEC06747.1 |
| ProteinID:ANM61828.1 | ArrayExpress:AT2G18260 | EnsemblPlantsGene:AT2G18260 | RefSeq:AT2G18260 | TAIR:AT2G18260 | RefSeq:AT2G18260-TAIR-G |
| EnsemblPlants:AT2G18260.1 | TAIR:AT2G18260.1 | Unigene:At.52801 | ncoils:Coil | EMBL:DQ446518 | GO:GO:0000149 |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0006887 | GO:GO:0006906 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0012505 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 | RefSeq:NP_001318245.1 |
| RefSeq:NP_179418.2 | ProteinID:OAP08300.1 | PFAM:PF00804 | PFAM:PF05739 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0007611 | PO:PO:0009046 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF123 |
| UniProt:Q9ZPV9 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | Symbol:SYP112 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0000D5BC6A | SEG:seg |
Description
SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
Coordinates
chr2:+:7941778..7943388
Molecular Weight (calculated)
35044.9 Da
IEP (calculated)
6.390
GRAVY (calculated)
-0.515
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.