Factsheet for GSMUA_Achr10P29510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g04720.t01	Wine grape	cytosol	52.57	47.83
KRH76768	Soybean	cytosol	52.57	47.83
PGSC0003DMT400001933	Potato	cytosol	51.1	47.44
Solyc01g109750.2.1	Tomato	cytosol	48.53	47.14
VIT_04s0043g00820.t01	Wine grape	cytosol	50.74	46.15
KRH28699	Soybean	cytosol	50.74	46.15
VIT_04s0023g01980.t01	Wine grape	cytosol	50.0	45.48
CDY25157	Canola	cytosol	33.46	45.05
Bra039622.1-P	Field mustard	cytosol	47.06	44.44
CDY46302	Canola	cytosol	47.06	44.44
Bra024476.1-P	Field mustard	cytosol	45.59	43.36
AT2G18260.1	Thale cress	cytosol	48.53	43.28
Solyc02g085090.1.1	Tomato	cytosol	47.43	43.14
PGSC0003DMT400009282	Potato	cytosol, mitochondrion	47.43	43.14
CDY29223	Canola	cytosol	45.22	42.86
CDY20921	Canola	cytosol	44.49	42.31
GSMUA_Achr6P31140_001	Banana	cytosol	36.4	36.13
GSMUA_Achr1P25170_001	Banana	cytosol	31.62	35.1
KRH43180	Soybean	cytosol	31.99	33.85
GSMUA_Achr10P...	Banana	cytosol	34.19	33.33
GSMUA_Achr6P04820_001	Banana	cytosol	29.78	31.89
GSMUA_Achr8P03020_001	Banana	cytosol	34.93	30.55
KRH59335	Soybean	cytosol	16.91	30.26
GSMUA_Achr2P01540_001	Banana	cytosol	32.72	29.87
GSMUA_Achr9P24850_001	Banana	cytosol	27.94	27.14
GSMUA_Achr2P17410_001	Banana	cytosol	29.04	26.78
GSMUA_Achr10P...	Banana	cytosol	28.31	25.33
GSMUA_Achr7P16680_001	Banana	plasma membrane	31.25	22.73

Protein Annotations

Gene3D:1.20.58.70	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0009409	GO:GO:0009628
GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSMUA_Achr10G29510_001	EnsemblPlants:GSMUA_Achr10P29510_001	EnsemblPlants:GSMUA_Achr10T29510_001	InterPro:IPR000727
UniProt:M0RMH5	PFAM:PF00804	PFAM:PF05739	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF128
SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin_N	InterPro:T_SNARE_dom	UniParc:UPI000295D86C
SEG:seg	:	:	:	:	:

Description

Putative Syntaxin-112 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29510_001]

Coordinates

chr10:+:31998122..32003510

Molecular Weight (calculated)

30078.1 Da

IEP (calculated)

5.142

GRAVY (calculated)

-0.354

Length

272 amino acids

Sequence
(BLAST)

001: MNDLMTKSFM SYVELKKQAL KDLEAGADDP PKVEAAAGGL TRMEEENLAR FFSEIGGIQS EMDDVSSLLA KAIKVRLESL DRSNAANRGV AACFTEGSPV
101: DRTRVSVTNG LRTKLRETMN GFQLLRERIV SDHREGLKRR YLNATGEAAT EETIDKMLSG ASQVGLLDNR GEVDLEVLER QKAVSDIQRS LMQLHQVFLD
201: MAVMMEGQED QLNDIEENVA RAKDYISGGT DRLVSANAMR KRNKKCACLV CALLLVVISS VSSKSNEINI EK

Best Arabidopsis Sequence Match ( AT2G18260.1 )
(BLAST)

001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR

Arabidopsis Description

SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.