Factsheet for VIT_03s0038g04720.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001933	Potato	cytosol	65.55	66.89
Solyc01g109750.2.1	Tomato	cytosol	61.87	66.07
VIT_04s0043g00820.t01	Wine grape	cytosol	65.22	65.22
VIT_04s0023g01980.t01	Wine grape	cytosol	64.88	64.88
GSMUA_Achr10P...	Banana	cytosol	47.83	52.57
VIT_04s0008g02770.t01	Wine grape	cytosol	45.82	44.05
VIT_12s0059g02060.t01	Wine grape	cytosol	42.81	41.97
VIT_00s0404g00100.t01	Wine grape	cytosol	40.8	39.61
VIT_08s0032g01150.t01	Wine grape	cytosol	41.81	38.58
VIT_12s0059g02340.t01	Wine grape	cytosol	35.12	34.54
VIT_08s0032g00440.t01	Wine grape	cytosol	34.78	33.88

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100262324	wikigene:100262324	MapMan:22.7.1.1	EMBL:AM442013
ProteinID:CAN76259	ProteinID:CAN76259.1	ProteinID:CCB60474	ProteinID:CCB60474.1	ncoils:Coil	UniProt:F6I0K8
EMBL:FN596508	GO:GO:0000149	GO:GO:0003674	GO:GO:0003824	GO:GO:0004097	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0016491	GO:GO:0031201	GO:GO:0046872	GO:GO:0048278	GO:GO:0055114
GO:GO:0061025	InterPro:IPR000727	EntrezGene:LOC100262324	wikigene:LOC100262324	PFAM:PF00804	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF128	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0001982DDA	ArrayExpress:VIT_03s0038g04720	EnsemblPlantsGene:VIT_03s0038g04720	EnsemblPlants:VIT_03s0038g04720.t01	unigene:Vvi.22948	RefSeq:XP_002284067
RefSeq:XP_002284067.1	RefSeq:XP_010645099.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:3462546..3463732

Molecular Weight (calculated)

34181.2 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.467

Length

299 amino acids

Sequence
(BLAST)

001: MNDLMTKSFL SYVELKKQAM KDLESEPDIE MGKLDPTDEQ NLTNFFEEVG AIKTDMEEIV NLLLDLQDLN EESKSTHSAK VLRGLRDRIN SDMVTILRKA
101: KNIKARLGSL DQSNIDNRSI SAAYKEGSPI DRTRMSVTNG LRIKLRDMMN DFQSLRDQIV KDHKECLKRR YFNATGEEPS EEVVEKMILG GGQVNVFDGK
201: ADLVMENQER HEALKEIQRS LTELHQVFLD MAVLVERQGE EVNDIEQNVA QAGDYISEGT KKLDSAKQLK KRSMKWTYCL GALIFVLILI CLILTFLKN

Best Arabidopsis Sequence Match ( AT2G18260.1 )
(BLAST)

001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR

Arabidopsis Description

SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.