Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 2
- golgi 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P31140_001 | Banana | cytosol | 75.24 | 85.4 |
| EER93336 | Sorghum | cytosol | 71.7 | 72.64 |
| Zm00001d034365_P001 | Maize | plasma membrane | 71.38 | 72.55 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 72.67 | 71.29 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 72.03 | 70.0 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 72.03 | 69.78 |
| Os03t0787000-01 | Rice | plasma membrane | 73.63 | 69.39 |
| PGSC0003DMT400072325 | Potato | cytosol | 60.13 | 61.92 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 50.48 | 61.57 |
| Solyc10g081850.1.1 | Tomato | cytosol | 59.81 | 61.39 |
| Solyc01g006950.2.1 | Tomato | nucleus | 58.2 | 60.33 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 62.06 | 59.57 |
| PGSC0003DMT400054965 | Potato | cytosol | 57.23 | 59.33 |
| KRH32862 | Soybean | cytosol | 57.88 | 58.82 |
| KRH72168 | Soybean | cytosol | 56.59 | 57.7 |
| CDY70958 | Canola | cytosol | 58.2 | 54.35 |
| Bra001422.1-P | Field mustard | cytosol | 58.2 | 54.35 |
| CDX73851 | Canola | cytosol | 58.2 | 54.19 |
| KRH72169 | Soybean | cytosol | 57.88 | 53.73 |
| Zm00001d013115_P001 | Maize | cytosol | 25.08 | 53.42 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 59.16 | 53.18 |
| CDY01061 | Canola | cytosol, plastid | 57.23 | 53.13 |
| KRH32861 | Soybean | mitochondrion | 56.27 | 52.71 |
| CDY08492 | Canola | cytosol | 56.91 | 52.21 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 54.02 | 51.69 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 42.12 | 51.57 |
| GSMUA_Achr10P... | Banana | cytosol | 45.66 | 50.9 |
| KRH68016 | Soybean | cytosol | 47.91 | 50.68 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 47.27 | 50.34 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 46.95 | 48.51 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 47.27 | 47.73 |
| AT3G52400.1 | Thale cress | cytosol | 52.09 | 47.51 |
| Bra033436.1-P | Field mustard | cytosol | 51.77 | 47.08 |
| CDY23212 | Canola | cytosol | 51.77 | 46.94 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 49.84 | 46.41 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 48.87 | 45.24 |
| GSMUA_Achr2P01540_001 | Banana | cytosol | 41.16 | 42.95 |
| GSMUA_Achr2P17410_001 | Banana | cytosol | 40.19 | 42.37 |
| CDX95336 | Canola | cytosol | 13.83 | 40.95 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 31.83 | 40.41 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 19.94 | 40.0 |
| GSMUA_Achr9P24850_001 | Banana | cytosol | 34.73 | 38.57 |
| GSMUA_Achr10P... | Banana | cytosol | 37.62 | 38.49 |
| GSMUA_Achr7P16680_001 | Banana | plasma membrane | 43.41 | 36.1 |
| GSMUA_Achr10P... | Banana | cytosol | 30.55 | 34.93 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | EnsemblPlantsGene:GSMUA_Achr8G03020_001 | EnsemblPlants:GSMUA_Achr8P03020_001 |
| EnsemblPlants:GSMUA_Achr8T03020_001 | InterPro:IPR000727 | UniProt:M0TM54 | PFAM:PF00804 | PFAM:PF05739 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002968CAB | SEG:seg | : |
Description
Syntaxin-121 [Source:GMGC_GENE;Acc:GSMUA_Achr8G03020_001]
Coordinates
chr8:+:2080731..2081666
Molecular Weight (calculated)
34339.8 Da
IEP (calculated)
6.191
GRAVY (calculated)
-0.322
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNLFSSASW RQDVESGGGR GSELQMAAGG ANLDSFFEDV ETLKNDLREV ERLHRSLHEA NEEGKSLHEA SAVRALRARM DADVALALKK AKFIKLRLES
101: LDRANAANRA VPGCGPGTTT DRTRTSVVAG LRKKLRDSMD VFAELRSKVA SDYRETVERR YYTVTGDVPD EATVDELVAT GEGERFLQRA IEEQGRGRVL
201: DVVAEIREWH GAVAELERSL LELQQVFMDM AVLVEAQGQQ LDDIESNVGR AQSFVRHGTE QLGAARQHQK STRKWTCIAI IIILIIILII VLSIVLTHTN
301: KSSSSSASPP S
101: LDRANAANRA VPGCGPGTTT DRTRTSVVAG LRKKLRDSMD VFAELRSKVA SDYRETVERR YYTVTGDVPD EATVDELVAT GEGERFLQRA IEEQGRGRVL
201: DVVAEIREWH GAVAELERSL LELQQVFMDM AVLVEAQGQQ LDDIESNVGR AQSFVRHGTE QLGAARQHQK STRKWTCIAI IIILIIILII VLSIVLTHTN
301: KSSSSSASPP S
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.