CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72168	Soybean	cytosol	92.81	93.11
Solyc01g006950.2.1	Tomato	nucleus	69.93	71.33
PGSC0003DMT400054965	Potato	cytosol	69.61	71.0
PGSC0003DMT400072325	Potato	cytosol	66.99	67.88
KRG96271	Soybean	cytosol, golgi, mitochondrion	66.67	67.77
Solyc10g081850.1.1	Tomato	cytosol	66.67	67.33
KRH68016	Soybean	cytosol	64.38	67.01
GSMUA_Achr6P31140_001	Banana	cytosol	58.5	65.33
KRH72169	Soybean	cytosol	71.24	65.07
VIT_08s0032g01150.t01	Wine grape	cytosol	68.63	64.81
KRH32861	Soybean	mitochondrion	70.26	64.76
GSMUA_Achr8P03020_001	Banana	cytosol	58.82	57.88
EER93336	Sorghum	cytosol	57.84	57.65
KRH21567	Soybean	cytosol	56.86	57.24
Zm00001d034365_P001	Maize	plasma membrane	57.19	57.19
KRH10761	Soybean	cytosol	56.54	56.91
KRH41917	Soybean	cytosol	56.21	56.58
TraesCS5A01G425600.1	Wheat	cytosol, nucleus, plastid	58.17	56.15
Os03t0787000-01	Rice	plasma membrane	60.46	56.06
TraesCS5B01G427600.1	Wheat	cytosol, golgi, nucleus	58.17	55.62
TraesCSU01G076400.1	Wheat	cytosol, golgi, nucleus	58.17	55.45
HORVU5Hr1G103590.1	Barley	cytosol, mitochondrion	43.14	51.76
Zm00001d013115_P001	Maize	cytosol	22.55	47.26
KRH70119	Soybean	cytosol	46.08	44.34
KRH26811	Soybean	cytosol	44.12	44.12
KRH22542	Soybean	endoplasmic reticulum, extracellular, mitochondrion	43.79	43.79
KRH08461	Soybean	cytosol	45.42	43.17
KRH08507	Soybean	cytosol	42.48	42.21
Zm00001d013114_P001	Maize	cytosol, plastid	39.22	41.1
KRH28699	Soybean	cytosol	38.89	39.8
KRH76768	Soybean	cytosol	38.24	39.13
KRH70169	Soybean	cytosol	16.99	35.37
HORVU5Hr1G103620.1	Barley	cytosol	16.67	32.9
KRH43180	Soybean	cytosol	26.8	31.91
KRH59335	Soybean	cytosol	15.69	31.58

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100793347	MapMan:22.7.1.1	EMBL:ACUP02006187	ncoils:Coil
EnsemblPlantsGene:GLYMA_10G082500	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810
GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278
GO:GO:0061025	UniProt:I1L9L3	InterPro:IPR000727	EnsemblPlants:KRH32862	ProteinID:KRH32862	ProteinID:KRH32862.1
PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF69
SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000233D500	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:10020933..10023560

Molecular Weight (calculated)

34847.6 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.550

Length

306 amino acids

Sequence
(BLAST)

001: MNDLFSGSFS RNNDQVLPDH HHHVIEMAAA SSPTAEGSAN LEKFFQEVEQ VKEDLKELER LHENLRGNHE KSKTLHSAKA VKELRSRMDA DVALALKKAK
101: LVKVRLETLD RSNQVSRNLP GLEPGSSSDR TRTSVVSGLR KKLKDSMDSF NSLRQQISSE YRETVQRRYY TVTGENPDDK TIDLLISTGE SETFLQKAIE
201: QQGRASVMDT IQEIQERHDT VKEIERNLNE LHQVFLDMAV LVQSQGEQLD DIESHVARAN SYVRGGVQQL HVARKHQKNT RKWTCIAIIL LIIIILIIVL
301: PIVLRK

Best Arabidopsis Sequence Match ( AT3G11820.1 )
(BLAST)

001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR

Arabidopsis Description

SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.