Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 80.78 | 64.17 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 80.39 | 64.06 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 78.82 | 63.41 |
| Zm00001d034365_P001 | Maize | plasma membrane | 73.33 | 61.11 |
| EER93336 | Sorghum | cytosol | 72.94 | 60.59 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 60.78 | 56.57 |
| Os03t0787000-01 | Rice | plasma membrane | 72.16 | 55.76 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 61.57 | 50.48 |
| PGSC0003DMT400072325 | Potato | cytosol | 53.73 | 45.36 |
| Solyc10g081850.1.1 | Tomato | cytosol | 53.73 | 45.21 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 56.08 | 44.14 |
| Solyc01g006950.2.1 | Tomato | nucleus | 51.37 | 43.67 |
| KRH72168 | Soybean | cytosol | 52.16 | 43.61 |
| KRH32862 | Soybean | cytosol | 51.76 | 43.14 |
| PGSC0003DMT400054965 | Potato | cytosol | 50.2 | 42.67 |
| CDY70958 | Canola | cytosol | 53.33 | 40.84 |
| Bra001422.1-P | Field mustard | cytosol | 53.33 | 40.84 |
| CDX73851 | Canola | cytosol | 53.33 | 40.72 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 46.27 | 40.41 |
| KRH72169 | Soybean | cytosol | 52.55 | 40.0 |
| CDY01061 | Canola | cytosol, plastid | 52.16 | 39.7 |
| KRH32861 | Soybean | mitochondrion | 51.37 | 39.46 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 53.33 | 39.31 |
| CDY08492 | Canola | cytosol | 51.76 | 38.94 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 48.63 | 38.15 |
| KRH68016 | Soybean | cytosol | 42.75 | 37.07 |
| AT3G52400.1 | Thale cress | cytosol | 49.02 | 36.66 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 42.35 | 35.88 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 43.14 | 35.71 |
| HORVU5Hr1G026120.1 | Barley | cytosol | 42.35 | 35.29 |
| Bra033436.1-P | Field mustard | cytosol | 46.67 | 34.8 |
| CDY23212 | Canola | cytosol | 46.67 | 34.69 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 44.71 | 33.93 |
| HORVU6Hr1G095330.1 | Barley | cytosol | 40.0 | 33.89 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 43.92 | 33.53 |
| HORVU2Hr1G045350.3 | Barley | cytosol | 38.43 | 33.45 |
| CDX95336 | Canola | cytosol | 13.33 | 32.38 |
| HORVU2Hr1G057350.2 | Barley | cytosol | 40.39 | 31.31 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 41.57 | 29.2 |
| Zm00001d013115_P001 | Maize | cytosol | 11.76 | 20.55 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 24.31 | 19.68 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 21.96 | 18.3 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 22.35 | 18.1 |
| HORVU2Hr1G043130.15 | Barley | cytosol | 20.0 | 16.24 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 1.96 | 3.23 |
Protein Annotations
| Gene3D:1.20.58.70 | MapMan:22.7.1.1 | UniProt:A0A287SJC2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:HORVU5Hr1G103590 | EnsemblPlants:HORVU5Hr1G103590.1 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI000B46C477 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:616635900..616636816
Molecular Weight (calculated)
24352.1 Da
IEP (calculated)
10.128
GRAVY (calculated)
-0.287
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: SNSRLGSKIY PNPRLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL ESLDRANAAN RSVAGCGPGS STDRTRTSVV AGLRKKLRDA MESFSSLRSR
101: ITSEYRETVA RRYFTVTGSQ PDEATLDTLA ETGEGERLLQ RAIAEQQGRG EVLGVVAEIQ ERHGAVADLE RSLLELQQVF NDMAVLVAAQ GEQLDDIEGH
201: VGRARSFVDR GREQLQVARK HQKSSRKWTF IGIGILLVVI LIIVIPIVLK NTNKS
101: ITSEYRETVA RRYFTVTGSQ PDEATLDTLA ETGEGERLLQ RAIAEQQGRG EVLGVVAEIQ ERHGAVADLE RSLLELQQVF NDMAVLVAAQ GEQLDDIEGH
201: VGRARSFVDR GREQLQVARK HQKSSRKWTF IGIGILLVVI LIIVIPIVLK NTNKS
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Arabidopsis Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.