Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70958 | Canola | cytosol | 87.86 | 91.29 |
| CDX73851 | Canola | cytosol | 87.86 | 91.02 |
| Bra001422.1-P | Field mustard | cytosol | 87.57 | 90.99 |
| CDY01061 | Canola | cytosol, plastid | 87.28 | 90.15 |
| CDY08492 | Canola | cytosol | 88.15 | 89.97 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 84.1 | 89.54 |
| PGSC0003DMT400072325 | Potato | cytosol | 63.58 | 72.85 |
| Solyc10g081850.1.1 | Tomato | cytosol | 63.58 | 72.61 |
| Solyc01g006950.2.1 | Tomato | nucleus | 62.72 | 72.33 |
| KRH32861 | Soybean | mitochondrion | 69.36 | 72.29 |
| PGSC0003DMT400054965 | Potato | cytosol | 61.85 | 71.33 |
| KRH72169 | Soybean | cytosol | 68.5 | 70.75 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 65.9 | 70.37 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 53.47 | 67.52 |
| AT3G52400.1 | Thale cress | cytosol | 62.72 | 63.64 |
| AT1G11250.1 | Thale cress | cytosol | 53.47 | 62.08 |
| AT1G61290.2 | Thale cress | cytosol | 53.47 | 61.06 |
| EER93336 | Sorghum | cytosol | 53.76 | 60.59 |
| Os03t0787000-01 | Rice | plasma membrane | 57.51 | 60.3 |
| Zm00001d034365_P001 | Maize | plasma membrane | 53.18 | 60.13 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 53.18 | 59.16 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 53.18 | 58.04 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 53.47 | 57.81 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 53.47 | 57.63 |
| AT4G03330.1 | Thale cress | cytosol | 50.29 | 57.05 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 39.31 | 53.33 |
| AT5G08080.3 | Thale cress | cytosol | 44.22 | 48.57 |
| AT3G03800.1 | Thale cress | cytosol | 41.04 | 46.41 |
| AT1G08560.1 | Thale cress | cytosol | 39.31 | 43.87 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 36.99 | 43.84 |
| Zm00001d013115_P001 | Maize | cytosol | 18.5 | 43.84 |
| AT2G18260.1 | Thale cress | cytosol | 32.37 | 36.72 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 14.45 | 32.26 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:820355 | UniProt:A0A178VIM4 | ProteinID:AAF23198.1 |
| ProteinID:AEE75102.1 | ProteinID:AEE75103.1 | EMBL:AF112864 | ArrayExpress:AT3G11820 | EnsemblPlantsGene:AT3G11820 | RefSeq:AT3G11820 |
| TAIR:AT3G11820 | RefSeq:AT3G11820-TAIR-G | EnsemblPlants:AT3G11820.1 | TAIR:AT3G11820.1 | EMBL:AY087842 | EMBL:AY093151 |
| Unigene:At.11000 | EMBL:BT003393 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0005886 | GO:GO:0006612 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0006887 | GO:GO:0006906 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009504 |
| GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009620 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009987 | GO:GO:0010119 | GO:GO:0010148 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0031348 | GO:GO:0043495 | GO:GO:0048278 |
| GO:GO:0050832 | GO:GO:0061025 | GO:GO:0072660 | InterPro:IPR000727 | RefSeq:NP_187788.1 | RefSeq:NP_974288.1 |
| ProteinID:OAP05706.1 | PFAM:PF00804 | PFAM:PF05739 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | UniProt:Q9ZSD4 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | Symbol:SYP121 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000000BFF2 | SEG:seg | : | : | : |
Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
Coordinates
chr3:-:3729305..3731251
Molecular Weight (calculated)
37959.1 Da
IEP (calculated)
9.451
GRAVY (calculated)
-0.573
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.