Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 98.11 | 97.19 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 97.48 | 96.26 |
| Zm00001d034365_P001 | Maize | plasma membrane | 86.75 | 89.87 |
| EER93336 | Sorghum | cytosol | 86.44 | 89.25 |
| Os03t0787000-01 | Rice | plasma membrane | 85.49 | 82.12 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 63.41 | 78.82 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 65.93 | 76.28 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 71.29 | 72.67 |
| Zm00001d013115_P001 | Maize | cytosol | 31.55 | 68.49 |
| PGSC0003DMT400072325 | Potato | cytosol | 58.36 | 61.26 |
| Solyc10g081850.1.1 | Tomato | cytosol | 58.36 | 61.06 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 62.15 | 60.8 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 55.84 | 60.62 |
| Solyc01g006950.2.1 | Tomato | nucleus | 56.78 | 60.0 |
| PGSC0003DMT400054965 | Potato | cytosol | 56.15 | 59.33 |
| KRH32862 | Soybean | cytosol | 56.15 | 58.17 |
| KRH72168 | Soybean | cytosol | 55.2 | 57.38 |
| CDY70958 | Canola | cytosol | 58.99 | 56.16 |
| Bra001422.1-P | Field mustard | cytosol | 58.99 | 56.16 |
| CDX73851 | Canola | cytosol | 58.99 | 55.99 |
| KRH72169 | Soybean | cytosol | 58.04 | 54.93 |
| KRH32861 | Soybean | mitochondrion | 57.41 | 54.82 |
| CDY01061 | Canola | cytosol, plastid | 56.78 | 53.73 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 58.04 | 53.18 |
| CDY08492 | Canola | cytosol | 56.47 | 52.8 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 53.63 | 52.31 |
| KRH68016 | Soybean | cytosol | 47.95 | 51.7 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 47.95 | 50.5 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 47.32 | 49.02 |
| AT3G52400.1 | Thale cress | cytosol | 52.68 | 48.97 |
| Bra033436.1-P | Field mustard | cytosol | 51.42 | 47.66 |
| CDY23212 | Canola | cytosol | 51.42 | 47.52 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 46.06 | 47.4 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 49.53 | 47.01 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 49.53 | 46.73 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 51.73 | 43.39 |
| TraesCS5A01G096800.1 | Wheat | cytosol | 41.32 | 42.81 |
| TraesCS7A01G481800.1 | Wheat | cytosol | 40.69 | 42.43 |
| TraesCS2A01G219200.1 | Wheat | cytosol | 40.38 | 42.24 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 41.32 | 41.46 |
| TraesCS2A01G246600.1 | Wheat | cytosol | 40.38 | 38.44 |
| CDX95336 | Canola | cytosol | 11.67 | 35.24 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 23.97 | 24.84 |
| TraesCS1A01G088800.1 | Wheat | cytosol | 22.4 | 24.74 |
| TraesCS5A01G240200.3 | Wheat | mitochondrion | 15.46 | 22.17 |
| TraesCS2A01G213400.1 | Wheat | cytosol | 18.61 | 22.01 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS5A01G425600 | EnsemblPlants:TraesCS5A01G425600.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg |
Description
No Description!
Coordinates
chr5A:-:611127055..611128008
Molecular Weight (calculated)
34422.7 Da
IEP (calculated)
7.634
GRAVY (calculated)
-0.385
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNLFSSSWK RAGAGGDGGD LESGGVEMTA PPGAAAGASL DRFFEDVESI KDDLRELERI QRSLHDANES GKSLHDASAV RALRSRMDAD VAAAIKKAKV
101: VKLRLESLDR ANAANRSVAG CGPGSSTDRT RTSVVAGLRK KLRDAMEAFS SLRSRITSEY RDTVARRYFT VTGAQPDEAT LDTLADTGEG ERFLQRAIAE
201: QQGRGEVLGV VAEIQERHGA VADLERSLLE LQQVFNDMAV LVAAQGEQLD DIEGHVGRAR SFVDRGREQL QVARKHQKSS RKWTCIGIGI LLVIILIIVI
301: PIVLTNTNKS SNNNNQQ
101: VKLRLESLDR ANAANRSVAG CGPGSSTDRT RTSVVAGLRK KLRDAMEAFS SLRSRITSEY RDTVARRYFT VTGAQPDEAT LDTLADTGEG ERFLQRAIAE
201: QQGRGEVLGV VAEIQERHGA VADLERSLLE LQQVFNDMAV LVAAQGEQLD DIEGHVGRAR SFVDRGREQL QVARKHQKSS RKWTCIGIGI LLVIILIIVI
301: PIVLTNTNKS SNNNNQQ
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.