Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G240200.3 | Wheat | mitochondrion | 38.68 | 50.23 |
| CDY21160 | Canola | cytosol | 19.16 | 41.35 |
| CDY51747 | Canola | cytosol | 19.16 | 40.74 |
| CDY50666 | Canola | cytosol | 18.82 | 40.0 |
| Solyc01g056810.2.1 | Tomato | cytosol | 31.01 | 35.18 |
| TraesCS7A01G481800.1 | Wheat | cytosol | 36.24 | 34.21 |
| EER98026 | Sorghum | cytosol | 35.89 | 33.99 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 35.89 | 33.88 |
| TraesCS5B01G034800.1 | Wheat | cytosol | 34.84 | 33.0 |
| TraesCS2A01G246600.1 | Wheat | cytosol | 37.63 | 32.43 |
| VIT_08s0032g00440.t01 | Wine grape | cytosol | 33.1 | 30.94 |
| TraesCS5B01G035600.1 | Wheat | cytosol | 33.1 | 30.74 |
| Solyc10g081580.1.1 | Tomato | cytosol, plastid | 32.4 | 30.0 |
| PGSC0003DMT400072284 | Potato | cytosol | 32.4 | 30.0 |
| KRH08507 | Soybean | cytosol | 31.36 | 29.22 |
| Bra028672.1-P | Field mustard | cytosol | 30.66 | 29.04 |
| Bra005968.1-P | Field mustard | cytosol | 30.66 | 28.95 |
| Bra009318.1-P | Field mustard | cytosol | 30.31 | 28.71 |
| AT3G03800.1 | Thale cress | cytosol | 30.31 | 28.43 |
| TraesCS5A01G096800.1 | Wheat | cytosol | 29.97 | 28.1 |
| AT5G08080.3 | Thale cress | cytosol | 30.66 | 27.94 |
| CDY29963 | Canola | cytosol | 29.62 | 27.42 |
| GSMUA_Achr2P01540_001 | Banana | cytosol | 28.22 | 27.18 |
| Zm00001d018867_P002 | Maize | plastid | 35.54 | 26.09 |
| TraesCS2A01G219200.1 | Wheat | cytosol | 27.53 | 26.07 |
| Bra031972.1-P | Field mustard | cytosol | 23.0 | 23.57 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 24.74 | 23.2 |
| Bra036431.1-P | Field mustard | cytosol | 21.95 | 22.66 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 24.74 | 22.4 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 21.6 | 19.62 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 24.04 | 18.25 |
| CDY51748 | Canola | cytosol | 11.15 | 18.08 |
| CDY50665 | Canola | cytosol | 10.8 | 17.82 |
| CDY21161 | Canola | cytosol | 10.8 | 17.32 |
| KRH70169 | Soybean | cytosol | 8.36 | 16.33 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 16.38 | 15.36 |
| TraesCS2A01G213400.1 | Wheat | cytosol | 10.8 | 11.57 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G088800.1 | EnsemblPlantsGene:TraesCS1A01G088800 | Gene3D:1.20.58.70 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | InterPro:IPR000727 | InterPro:SNARE | InterPro:Syntaxin_N | InterPro:T_SNARE_dom |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF153 | PFAM:PF00804 | PFscan:PS50192 | SEG:seg | SMART:SM00397 |
| SUPFAM:SSF47661 | TIGR:cd15848 | MapMan:22.7.1.1 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:77096207..77100193
Molecular Weight (calculated)
32378.1 Da
IEP (calculated)
7.399
GRAVY (calculated)
-0.269
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGVKLPRT TSQQHVPLGH ATTVSPVNPV AHERDECDHE FMSTYWQWRR RRRAQHKVDH PCVGVVNGEE LTTGMQRLRS GLLRGHGAMA RVIHNARVNE
101: CVVLDLYSFS TLIRGCGQVI WSVHGRCSMV MRESIGQEYR EVVERRVFTV TGNRLDEETG RSEQIFKDAV QKQGRAQILD TVVEIQERHD AVRDLERKLL
201: ELQKIFLDMA VLVEAQGDMI SHIETHGSVS TQQVKTQFVM PPPPVVTTRS LHLVYPEPLI VVAVLSISAC HDIVAGLLQP CQQQSQA
101: CVVLDLYSFS TLIRGCGQVI WSVHGRCSMV MRESIGQEYR EVVERRVFTV TGNRLDEETG RSEQIFKDAV QKQGRAQILD TVVEIQERHD AVRDLERKLL
201: ELQKIFLDMA VLVEAQGDMI SHIETHGSVS TQQVKTQFVM PPPPVVTTRS LHLVYPEPLI VVAVLSISAC HDIVAGLLQP CQQQSQA
001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA
Arabidopsis Description
SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.